setup.py

import setuptools

import versioneer

with open("README.md", "r") as fh:
    long_description = fh.read()

setuptools.setup(
    name="idconn",  # Replace with your own username
    version=versioneer.get_version(),
    cmdclass=versioneer.get_cmdclass(),
    author="Katie Bottenhorn",
    author_email="katie.bottenhorn@gmail.com",
    description="A Python pipeline for studying individual differences in brain connectivity.",
    long_description=long_description,
    long_description_content_type="text/markdown",
    url="https://github.com/NBCLab/IDConn",
    packages=setuptools.find_packages(),
    classifiers=[
        "Programming Language :: Python :: 3",
        "License :: OSI Approved :: MIT License",
        "Operating System :: OS Independent",
    ],
    python_requires=">=3.6",
    # dependency handling
    install_requires=[
        "numpy",
        "scipy",
        "nilearn",
        "scikit-learn",
        "pandas",
        "nibabel",
        "bctpy",
        "pybids",
        "networkx",
        "matplotlib",  # necessary until nilearn includes mpl as a dependency
        "enlighten",
        'pingouin'
    ],
    extras_require={
        "doc": [
            "m2r",
            "mistune<2",  # just temporary until m2r addresses this issue
            "recommonmark",
            "sphinx>=3.5",
            "sphinx-argparse",
            "sphinx-copybutton",
            "sphinx_gallery==0.10.1",
            "sphinxcontrib-bibtex",
        ],
        "tests": [
            "codecov",
            "coverage",
            "coveralls",
            "flake8-black",
            "flake8-docstrings",
            "flake8-isort",
            "pytest",
            "pytest-cov",
        ],
    },
    entry_points={
        "console_scripts": [
            "idconn=idconn.pipeline:_main",
        ]
    },
)