From bf370a44d1562dd8da0f652368a5310d4a3b3b0a Mon Sep 17 00:00:00 2001 From: LTLA Date: Fri, 13 Sep 2024 17:00:30 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20Artifact?= =?UTF-8?q?DB/alabaster.base@7509a17af931e7b29e3f82cb8368628d67857273=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 404.html | 2 +- LICENSE-text.html | 2 +- articles/index.html | 2 +- articles/userguide.html | 6 +- authors.html | 6 +- index.html | 2 +- pkgdown.yml | 2 +- reference/Rfc3339.html | 56 +++++++++---------- reference/acquireFile.html | 4 +- reference/altReadObject.html | 2 +- reference/altSaveObject.html | 2 +- reference/anyMissing.html | 2 +- .../chooseMissingPlaceholderForHdf5.html | 2 +- reference/createRedirection.html | 2 +- reference/hdf5.html | 2 +- reference/index.html | 2 +- reference/listObjects.html | 2 +- reference/loadDirectory.html | 2 +- reference/moveObject.html | 2 +- reference/quickLoadObject.html | 2 +- reference/quickReadCsv.html | 2 +- reference/readAtomicVector.html | 2 +- reference/readBaseFactor.html | 2 +- reference/readBaseList.html | 2 +- reference/readDataFrame.html | 2 +- reference/readDataFrameFactor.html | 2 +- reference/readMetadata.html | 2 +- reference/readObject.html | 2 +- reference/readObjectFile.html | 2 +- reference/removeObject.html | 2 +- reference/saveAtomicVector.html | 2 +- reference/saveBaseFactor.html | 2 +- reference/saveBaseList.html | 2 +- reference/saveDataFrameFactor.html | 2 +- reference/saveFormats.html | 2 +- reference/saveMetadata.html | 2 +- reference/saveObject.html | 2 +- reference/stageDataFrame.html | 2 +- reference/transformVectorForHdf5.html | 2 +- reference/validateDirectory.html | 4 +- reference/validateObject.html | 2 +- reference/writeMetadata.html | 2 +- 42 files changed, 75 insertions(+), 75 deletions(-) diff --git a/404.html b/404.html index 00e694c..c0fd622 100644 --- a/404.html +++ b/404.html @@ -32,7 +32,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/LICENSE-text.html b/LICENSE-text.html index fd1e37c..f8cdb25 100644 --- a/LICENSE-text.html +++ b/LICENSE-text.html @@ -17,7 +17,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/articles/index.html b/articles/index.html index 2f4289b..dfdf909 100644 --- a/articles/index.html +++ b/articles/index.html @@ -17,7 +17,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/articles/userguide.html b/articles/userguide.html index 48e2459..b42399f 100644 --- a/articles/userguide.html +++ b/articles/userguide.html @@ -32,7 +32,7 @@ alabaster.base - 1.5.7 + 1.5.8 @@ -527,13 +527,13 @@

Session information## [8] base ## ## other attached packages: -## [1] Matrix_1.7-0 alabaster.base_1.5.7 S4Vectors_0.43.2 +## [1] Matrix_1.7-0 alabaster.base_1.5.8 S4Vectors_0.43.2 ## [4] BiocGenerics_0.51.1 BiocStyle_2.33.1 ## ## loaded via a namespace (and not attached): ## [1] jsonlite_1.8.8 crayon_1.5.3 compiler_4.4.1 ## [4] BiocManager_1.30.25 Rcpp_1.0.13 rhdf5filters_1.17.0 -## [7] alabaster.matrix_1.5.6 jquerylib_0.1.4 systemfonts_1.1.0 +## [7] alabaster.matrix_1.5.8 jquerylib_0.1.4 systemfonts_1.1.0 ## [10] IRanges_2.39.2 textshaping_0.4.0 yaml_2.3.10 ## [13] fastmap_1.2.0 lattice_0.22-6 XVector_0.45.0 ## [16] R6_2.5.1 S4Arrays_1.5.7 knitr_1.48 diff --git a/authors.html b/authors.html index 30ef0fc..dd0a662 100644 --- a/authors.html +++ b/authors.html @@ -17,7 +17,7 @@ alabaster.base - 1.5.7 + 1.5.8 @@ -70,13 +70,13 @@

Citation

Lun A (2024). alabaster.base: Save Bioconductor Objects To File. -R package version 1.5.7, https://github.com/ArtifactDB/alabaster.base. +R package version 1.5.8, https://github.com/ArtifactDB/alabaster.base. 

@Manual{,
   title = {alabaster.base: Save Bioconductor Objects To File},
   author = {Aaron Lun},
   year = {2024},
-  note = {R package version 1.5.7},
+  note = {R package version 1.5.8},
   url = {https://github.com/ArtifactDB/alabaster.base},
 }
diff --git a/index.html b/index.html index 2f2e750..da2bdd0 100644 --- a/index.html +++ b/index.html @@ -33,7 +33,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/pkgdown.yml b/pkgdown.yml index 2687dd1..ca18e6e 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -3,4 +3,4 @@ pkgdown: 2.1.0 pkgdown_sha: ~ articles: userguide: userguide.html -last_built: 2024-09-10T22:25Z +last_built: 2024-09-13T17:00Z diff --git a/reference/Rfc3339.html b/reference/Rfc3339.html index 88983df..c0216be 100644 --- a/reference/Rfc3339.html +++ b/reference/Rfc3339.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 @@ -163,46 +163,46 @@

Author

Examples

out <- as.Rfc3339(Sys.time() + 1:10)
 out
-#>  [1] "2024-09-10T22:25:12+00:00" "2024-09-10T22:25:13+00:00"
-#>  [3] "2024-09-10T22:25:14+00:00" "2024-09-10T22:25:15+00:00"
-#>  [5] "2024-09-10T22:25:16+00:00" "2024-09-10T22:25:17+00:00"
-#>  [7] "2024-09-10T22:25:18+00:00" "2024-09-10T22:25:19+00:00"
-#>  [9] "2024-09-10T22:25:20+00:00" "2024-09-10T22:25:21+00:00"
+#>  [1] "2024-09-13T17:00:12+00:00" "2024-09-13T17:00:13+00:00"
+#>  [3] "2024-09-13T17:00:14+00:00" "2024-09-13T17:00:15+00:00"
+#>  [5] "2024-09-13T17:00:16+00:00" "2024-09-13T17:00:17+00:00"
+#>  [7] "2024-09-13T17:00:18+00:00" "2024-09-13T17:00:19+00:00"
+#>  [9] "2024-09-13T17:00:20+00:00" "2024-09-13T17:00:21+00:00"
 #> attr(,"class")
 #> [1] "Rfc3339"
 
 out[2:5]
-#> [1] "2024-09-10T22:25:13+00:00" "2024-09-10T22:25:14+00:00"
-#> [3] "2024-09-10T22:25:15+00:00" "2024-09-10T22:25:16+00:00"
+#> [1] "2024-09-13T17:00:13+00:00" "2024-09-13T17:00:14+00:00"
+#> [3] "2024-09-13T17:00:15+00:00" "2024-09-13T17:00:16+00:00"
 #> attr(,"class")
 #> [1] "Rfc3339"
 out[2] <- "2"
 c(out, out)
-#>  [1] "2024-09-10T22:25:12+00:00" NA                         
-#>  [3] "2024-09-10T22:25:14+00:00" "2024-09-10T22:25:15+00:00"
-#>  [5] "2024-09-10T22:25:16+00:00" "2024-09-10T22:25:17+00:00"
-#>  [7] "2024-09-10T22:25:18+00:00" "2024-09-10T22:25:19+00:00"
-#>  [9] "2024-09-10T22:25:20+00:00" "2024-09-10T22:25:21+00:00"
-#> [11] "2024-09-10T22:25:12+00:00" NA                         
-#> [13] "2024-09-10T22:25:14+00:00" "2024-09-10T22:25:15+00:00"
-#> [15] "2024-09-10T22:25:16+00:00" "2024-09-10T22:25:17+00:00"
-#> [17] "2024-09-10T22:25:18+00:00" "2024-09-10T22:25:19+00:00"
-#> [19] "2024-09-10T22:25:20+00:00" "2024-09-10T22:25:21+00:00"
+#>  [1] "2024-09-13T17:00:12+00:00" NA                         
+#>  [3] "2024-09-13T17:00:14+00:00" "2024-09-13T17:00:15+00:00"
+#>  [5] "2024-09-13T17:00:16+00:00" "2024-09-13T17:00:17+00:00"
+#>  [7] "2024-09-13T17:00:18+00:00" "2024-09-13T17:00:19+00:00"
+#>  [9] "2024-09-13T17:00:20+00:00" "2024-09-13T17:00:21+00:00"
+#> [11] "2024-09-13T17:00:12+00:00" NA                         
+#> [13] "2024-09-13T17:00:14+00:00" "2024-09-13T17:00:15+00:00"
+#> [15] "2024-09-13T17:00:16+00:00" "2024-09-13T17:00:17+00:00"
+#> [17] "2024-09-13T17:00:18+00:00" "2024-09-13T17:00:19+00:00"
+#> [19] "2024-09-13T17:00:20+00:00" "2024-09-13T17:00:21+00:00"
 #> attr(,"class")
 #> [1] "Rfc3339"
 
 as.character(out)
-#>  [1] "2024-09-10T22:25:12+00:00" NA                         
-#>  [3] "2024-09-10T22:25:14+00:00" "2024-09-10T22:25:15+00:00"
-#>  [5] "2024-09-10T22:25:16+00:00" "2024-09-10T22:25:17+00:00"
-#>  [7] "2024-09-10T22:25:18+00:00" "2024-09-10T22:25:19+00:00"
-#>  [9] "2024-09-10T22:25:20+00:00" "2024-09-10T22:25:21+00:00"
+#>  [1] "2024-09-13T17:00:12+00:00" NA                         
+#>  [3] "2024-09-13T17:00:14+00:00" "2024-09-13T17:00:15+00:00"
+#>  [5] "2024-09-13T17:00:16+00:00" "2024-09-13T17:00:17+00:00"
+#>  [7] "2024-09-13T17:00:18+00:00" "2024-09-13T17:00:19+00:00"
+#>  [9] "2024-09-13T17:00:20+00:00" "2024-09-13T17:00:21+00:00"
 as.POSIXct(out)
-#>  [1] "2024-09-10 22:25:12 UTC" NA                       
-#>  [3] "2024-09-10 22:25:14 UTC" "2024-09-10 22:25:15 UTC"
-#>  [5] "2024-09-10 22:25:16 UTC" "2024-09-10 22:25:17 UTC"
-#>  [7] "2024-09-10 22:25:18 UTC" "2024-09-10 22:25:19 UTC"
-#>  [9] "2024-09-10 22:25:20 UTC" "2024-09-10 22:25:21 UTC"
+#>  [1] "2024-09-13 17:00:12 UTC" NA                       
+#>  [3] "2024-09-13 17:00:14 UTC" "2024-09-13 17:00:15 UTC"
+#>  [5] "2024-09-13 17:00:16 UTC" "2024-09-13 17:00:17 UTC"
+#>  [7] "2024-09-13 17:00:18 UTC" "2024-09-13 17:00:19 UTC"
+#>  [9] "2024-09-13 17:00:20 UTC" "2024-09-13 17:00:21 UTC"
diff --git a/reference/acquireFile.html b/reference/acquireFile.html index 0ad8b8a..38e70d0 100644 --- a/reference/acquireFile.html +++ b/reference/acquireFile.html @@ -20,7 +20,7 @@ alabaster.base - 1.5.7 + 1.5.8 @@ -184,7 +184,7 @@

Examples

# Retrieving the file: acquireFile(tmp, "coldata/simple.csv.gz") -#> [1] "/tmp/RtmpDGZkKN/file7b358217a2a/coldata/simple.csv.gz" +#> [1] "/tmp/Rtmpftsb5q/file2c87c9db4cb/coldata/simple.csv.gz" diff --git a/reference/altReadObject.html b/reference/altReadObject.html index 92d3149..049f400 100644 --- a/reference/altReadObject.html +++ b/reference/altReadObject.html @@ -17,7 +17,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/altSaveObject.html b/reference/altSaveObject.html index 1528e4e..3d31034 100644 --- a/reference/altSaveObject.html +++ b/reference/altSaveObject.html @@ -17,7 +17,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/anyMissing.html b/reference/anyMissing.html index 89779cc..0b10187 100644 --- a/reference/anyMissing.html +++ b/reference/anyMissing.html @@ -19,7 +19,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/chooseMissingPlaceholderForHdf5.html b/reference/chooseMissingPlaceholderForHdf5.html index 9678ef4..d7c3d1b 100644 --- a/reference/chooseMissingPlaceholderForHdf5.html +++ b/reference/chooseMissingPlaceholderForHdf5.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/createRedirection.html b/reference/createRedirection.html index 40f0902..c54e8f5 100644 --- a/reference/createRedirection.html +++ b/reference/createRedirection.html @@ -20,7 +20,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/hdf5.html b/reference/hdf5.html index d9b7839..23522fa 100644 --- a/reference/hdf5.html +++ b/reference/hdf5.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/index.html b/reference/index.html index ea10ad9..3f7cd63 100644 --- a/reference/index.html +++ b/reference/index.html @@ -17,7 +17,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/listObjects.html b/reference/listObjects.html index b6153ba..b000ed9 100644 --- a/reference/listObjects.html +++ b/reference/listObjects.html @@ -17,7 +17,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/loadDirectory.html b/reference/loadDirectory.html index f2d2b70..a27e2b7 100644 --- a/reference/loadDirectory.html +++ b/reference/loadDirectory.html @@ -20,7 +20,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/moveObject.html b/reference/moveObject.html index 3d07296..7027a57 100644 --- a/reference/moveObject.html +++ b/reference/moveObject.html @@ -19,7 +19,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/quickLoadObject.html b/reference/quickLoadObject.html index 3112d09..173f34a 100644 --- a/reference/quickLoadObject.html +++ b/reference/quickLoadObject.html @@ -19,7 +19,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/quickReadCsv.html b/reference/quickReadCsv.html index c7a368d..3047da9 100644 --- a/reference/quickReadCsv.html +++ b/reference/quickReadCsv.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/readAtomicVector.html b/reference/readAtomicVector.html index 72fe069..755634e 100644 --- a/reference/readAtomicVector.html +++ b/reference/readAtomicVector.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/readBaseFactor.html b/reference/readBaseFactor.html index 4b17acd..17cb20e 100644 --- a/reference/readBaseFactor.html +++ b/reference/readBaseFactor.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/readBaseList.html b/reference/readBaseList.html index 04be0a4..dd69d04 100644 --- a/reference/readBaseList.html +++ b/reference/readBaseList.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/readDataFrame.html b/reference/readDataFrame.html index 4466f68..d2098f7 100644 --- a/reference/readDataFrame.html +++ b/reference/readDataFrame.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/readDataFrameFactor.html b/reference/readDataFrameFactor.html index 568d080..eaf4f32 100644 --- a/reference/readDataFrameFactor.html +++ b/reference/readDataFrameFactor.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/readMetadata.html b/reference/readMetadata.html index 3ffde5b..635cafe 100644 --- a/reference/readMetadata.html +++ b/reference/readMetadata.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/readObject.html b/reference/readObject.html index 368a562..ff67afd 100644 --- a/reference/readObject.html +++ b/reference/readObject.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/readObjectFile.html b/reference/readObjectFile.html index b7cb0f3..8757150 100644 --- a/reference/readObjectFile.html +++ b/reference/readObjectFile.html @@ -20,7 +20,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/removeObject.html b/reference/removeObject.html index 69c9e2a..1dd0d4c 100644 --- a/reference/removeObject.html +++ b/reference/removeObject.html @@ -19,7 +19,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/saveAtomicVector.html b/reference/saveAtomicVector.html index fc78492..7f2eaf6 100644 --- a/reference/saveAtomicVector.html +++ b/reference/saveAtomicVector.html @@ -17,7 +17,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/saveBaseFactor.html b/reference/saveBaseFactor.html index 7f0c184..e5183ed 100644 --- a/reference/saveBaseFactor.html +++ b/reference/saveBaseFactor.html @@ -17,7 +17,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/saveBaseList.html b/reference/saveBaseList.html index 7e56bca..2959594 100644 --- a/reference/saveBaseList.html +++ b/reference/saveBaseList.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/saveDataFrameFactor.html b/reference/saveDataFrameFactor.html index 4d6ed71..3f85e8e 100644 --- a/reference/saveDataFrameFactor.html +++ b/reference/saveDataFrameFactor.html @@ -17,7 +17,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/saveFormats.html b/reference/saveFormats.html index d21a2c3..4f335ec 100644 --- a/reference/saveFormats.html +++ b/reference/saveFormats.html @@ -17,7 +17,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/saveMetadata.html b/reference/saveMetadata.html index 91aecc8..d00514d 100644 --- a/reference/saveMetadata.html +++ b/reference/saveMetadata.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/saveObject.html b/reference/saveObject.html index 2296bef..09305f5 100644 --- a/reference/saveObject.html +++ b/reference/saveObject.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/stageDataFrame.html b/reference/stageDataFrame.html index ff1a1d0..039e7d1 100644 --- a/reference/stageDataFrame.html +++ b/reference/stageDataFrame.html @@ -17,7 +17,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/transformVectorForHdf5.html b/reference/transformVectorForHdf5.html index 0a596aa..02ffc91 100644 --- a/reference/transformVectorForHdf5.html +++ b/reference/transformVectorForHdf5.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/validateDirectory.html b/reference/validateDirectory.html index 84ffedf..bdcc349 100644 --- a/reference/validateDirectory.html +++ b/reference/validateDirectory.html @@ -17,7 +17,7 @@ alabaster.base - 1.5.7 + 1.5.8 @@ -119,7 +119,7 @@

Examples

write(file=file.path(tmp, "bar", "OBJECT"), '[ "WHEEE" ]') try(validateDirectory(tmp)) #> Error in value[[3L]](cond) : -#> failed to validate 'bar'; failed to read the OBJECT file at '/tmp/RtmpDGZkKN/file7b3719743a/bar'; metadata should be a JSON object +#> failed to validate 'bar'; failed to read the OBJECT file at '/tmp/Rtmpftsb5q/file2c859cfea8c/bar'; metadata should be a JSON object diff --git a/reference/validateObject.html b/reference/validateObject.html index 900ab49..72d174b 100644 --- a/reference/validateObject.html +++ b/reference/validateObject.html @@ -18,7 +18,7 @@ alabaster.base - 1.5.7 + 1.5.8 diff --git a/reference/writeMetadata.html b/reference/writeMetadata.html index a4b19cd..1564313 100644 --- a/reference/writeMetadata.html +++ b/reference/writeMetadata.html @@ -19,7 +19,7 @@ alabaster.base - 1.5.7 + 1.5.8