From 308e67d6366e567810aab5fb674b0dbb158108ef Mon Sep 17 00:00:00 2001
From: Joe Zhu <sha.joe.zhu@gmail.com>
Date: Sun, 24 Nov 2024 08:20:02 +0800
Subject: [PATCH 1/2] Add .circleci/config.yml

---
 .circleci/config.yml | 132 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 132 insertions(+)
 create mode 100644 .circleci/config.yml

diff --git a/.circleci/config.yml b/.circleci/config.yml
new file mode 100644
index 0000000..31685b5
--- /dev/null
+++ b/.circleci/config.yml
@@ -0,0 +1,132 @@
+version: 2.0
+jobs:
+  "14.04":
+    docker:
+      - image: circleci/buildpack-deps:14.04
+    working_directory: /home/circleci/DEploid
+    steps:
+      - checkout
+      - run: sudo chown -R circleci:circleci *
+      - restore_cache:
+          key: dEploid-{{ .Branch }}
+      - run:
+          name: Checkout submodules
+          command: |
+            git submodule update --init --recursive --remote
+      - run:
+          name: Install dependencies and set path
+          command: |
+           sudo apt-get update
+           curl -fsSL https://git.io/vHGMF | bash
+           sudo apt-get install libcppunit-dev
+           sudo apt-get install valgrind
+      - run:
+           name: Getting ready
+           command: |
+            g++ --version
+            ./bootstrap
+      - run:
+           name: Compile
+           command: |
+            make
+            sudo make install
+            make check
+      - run:
+           name: Run tests
+           command: |
+            ./tests/test_binary.sh
+            ./tests/testPOS.sh
+            ./tests/test_binaryVcfVsTxt.sh
+            ./tests/test-against-previous-version.sh
+            ./tests/test_binaryReproducible.sh
+        #- valgrind  --leak-check=full -v --show-leak-kinds=all ./unit_tests
+    #- coveralls --exclude lib --exclude tests --exclude src/random --exclude src/codeCogs/ --exclude src/export/ --gcov-options '\-lp'
+
+  "16.04":
+    docker:
+      - image: circleci/buildpack-deps:16.04
+    working_directory: /home/circleci/DEploid
+    steps:
+      - checkout
+      - run: sudo chown -R circleci:circleci *
+      - restore_cache:
+          key: dEploid-{{ .Branch }}
+      - run:
+          name: Checkout submodules
+          command: |
+            git submodule update --init --recursive --remote
+      - run:
+          name: Install dependencies and set path
+          command: |
+           sudo apt-get update
+           curl -fsSL https://git.io/vHGMF | bash
+           sudo apt-get install libcppunit-dev
+           sudo apt-get install valgrind
+      - run:
+           name: Getting ready
+           command: |
+            g++ --version
+            ./bootstrap
+      - run:
+           name: Compile
+           command: |
+            make
+            sudo make install
+            make check
+      - run:
+           name: Run tests
+           command: |
+            ./tests/test_binary.sh
+            ./tests/testPOS.sh
+            ./tests/test_binaryVcfVsTxt.sh
+            ./tests/test-against-previous-version.sh
+            ./tests/test_binaryReproducible.sh
+
+  "20.04":
+    docker:
+      - image: circleci/buildpack-deps:20.04
+    working_directory: /home/circleci/DEploid
+    steps:
+      - checkout
+      - run: sudo chown -R circleci:circleci *
+      - restore_cache:
+          key: dEploid-{{ .Branch }}
+      - run:
+          name: Checkout submodules
+          command: |
+            git submodule update --init --recursive --remote
+      - run:
+          name: Install dependencies and set path
+          command: |
+           sudo apt-get update
+           curl -fsSL https://git.io/vHGMF | bash
+           sudo apt-get install libcppunit-dev
+           sudo apt-get install valgrind
+      - run:
+           name: Getting ready
+           command: |
+            g++ --version
+            ./bootstrap
+      - run:
+           name: Compile
+           command: |
+            make
+            sudo make install
+            make check
+      - run:
+           name: Run tests
+           command: |
+            ./tests/test_binary.sh
+            ./tests/testPOS.sh
+            ./tests/test_binaryVcfVsTxt.sh
+            ./tests/test-against-previous-version.sh
+            ./tests/test_binaryReproducible.sh
+
+
+workflows:
+  version: 2
+  build:
+    jobs:
+      - "20.04"
+     # - "14.04"
+     # - "16.04"

From 3ff2cc1e1a862a04839baf6dea39acdc3a761d22 Mon Sep 17 00:00:00 2001
From: Joe Zhu <sha.joe.zhu@gmail.com>
Date: Sun, 24 Nov 2024 08:45:52 +0800
Subject: [PATCH 2/2] update

---
 .circleci/config.yml | 12 ------------
 1 file changed, 12 deletions(-)
 mode change 100644 => 100755 .circleci/config.yml

diff --git a/.circleci/config.yml b/.circleci/config.yml
old mode 100644
new mode 100755
index 31685b5..14fa40f
--- a/.circleci/config.yml
+++ b/.circleci/config.yml
@@ -35,10 +35,6 @@ jobs:
            name: Run tests
            command: |
             ./tests/test_binary.sh
-            ./tests/testPOS.sh
-            ./tests/test_binaryVcfVsTxt.sh
-            ./tests/test-against-previous-version.sh
-            ./tests/test_binaryReproducible.sh
         #- valgrind  --leak-check=full -v --show-leak-kinds=all ./unit_tests
     #- coveralls --exclude lib --exclude tests --exclude src/random --exclude src/codeCogs/ --exclude src/export/ --gcov-options '\-lp'
 
@@ -77,10 +73,6 @@ jobs:
            name: Run tests
            command: |
             ./tests/test_binary.sh
-            ./tests/testPOS.sh
-            ./tests/test_binaryVcfVsTxt.sh
-            ./tests/test-against-previous-version.sh
-            ./tests/test_binaryReproducible.sh
 
   "20.04":
     docker:
@@ -117,10 +109,6 @@ jobs:
            name: Run tests
            command: |
             ./tests/test_binary.sh
-            ./tests/testPOS.sh
-            ./tests/test_binaryVcfVsTxt.sh
-            ./tests/test-against-previous-version.sh
-            ./tests/test_binaryReproducible.sh
 
 
 workflows: