From 768ce7730f52505f4d2cc43b83c8ca9869e1bb73 Mon Sep 17 00:00:00 2001
From: Joe Zhu <sha.joe.zhu@gmail.com>
Date: Sun, 8 Dec 2024 23:39:27 +0800
Subject: [PATCH] update doc

---
 man/plotObsExpWSAF.Rd | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/man/plotObsExpWSAF.Rd b/man/plotObsExpWSAF.Rd
index f7d1702..7e5f913 100644
--- a/man/plotObsExpWSAF.Rd
+++ b/man/plotObsExpWSAF.Rd
@@ -31,7 +31,7 @@ Plot observed alternative allele frequency within sample against expected WSAF.
 }
 \examples{
 vcfFile <- system.file("extdata", "PG0390-C.test.vcf.gz", package = "DEploid.utils")
-PG0390CoverageVcf <- extractCoverageFromVcf(vcfFile)
+PG0390CoverageVcf <- extractCoverageFromVcf(vcfFile, "PG0390-C")
 obsWSAF <- computeObsWSAF(PG0390CoverageVcf$altCount, PG0390CoverageVcf$refCount)
 plafFile <- system.file("extdata", "labStrains.test.PLAF.txt", package = "DEploid.utils")
 # this example is not finished