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<div class="quarto-title">
<h1 class="title">MCDS comparison</h1>
</div>
<div class="quarto-title-meta">
<div>
<div class="quarto-title-meta-heading">Author</div>
<div class="quarto-title-meta-contents">
<p>Rexstad </p>
</div>
</div>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">June 23, 2023</p>
</div>
</div>
</div>
</header>
<section id="highlight-discrepencies" class="level2">
<h2 class="anchored" data-anchor-id="highlight-discrepencies">Highlight discrepencies</h2>
<p>I’ve added another metric to Laura’s columns. Defined as</p>
<p><span class="math display">\[\frac{\hat{N}_{mcds}-\hat{N}_{ddf}}{\hat{N}_{mcds}} \times 100\]</span> This is depicted in the last column of the data frame. If the absolute of this value exceeds 10%, the row is highlighted.</p>
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(knitr)</span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(kableExtra)</span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a>j <span class="ot"><-</span> <span class="fu">list.files</span>(<span class="st">"E:/mcds-compare"</span>, <span class="at">pattern=</span><span class="st">"ROBJ$"</span>)</span>
<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a><span class="cf">for</span> (i <span class="cf">in</span> <span class="dv">1</span><span class="sc">:</span><span class="fu">length</span>(j)) {</span>
<span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a> fname <span class="ot"><-</span> <span class="fu">paste0</span>(<span class="st">"E:/mcds-compare/"</span>, j[i])</span>
<span id="cb1-6"><a href="#cb1-6" aria-hidden="true" tabindex="-1"></a> <span class="fu">load</span>(fname)</span>
<span id="cb1-7"><a href="#cb1-7" aria-hidden="true" tabindex="-1"></a> pctdiff <span class="ot"><-</span> (model.compare<span class="sc">$</span>Nhat_MCDS <span class="sc">-</span> model.compare<span class="sc">$</span>Nhat_R)<span class="sc">/</span>model.compare<span class="sc">$</span>Nhat_MCDS <span class="sc">*</span> <span class="dv">100</span></span>
<span id="cb1-8"><a href="#cb1-8" aria-hidden="true" tabindex="-1"></a> model.compare<span class="sc">$</span>Nhatdiff <span class="ot"><-</span> <span class="fu">round</span>(pctdiff, <span class="dv">2</span>)</span>
<span id="cb1-9"><a href="#cb1-9" aria-hidden="true" tabindex="-1"></a> setname <span class="ot"><-</span> <span class="fu">unlist</span>(<span class="fu">strsplit</span>(j[i], <span class="at">split =</span> <span class="st">"."</span>, <span class="at">fixed =</span> <span class="cn">TRUE</span>))[<span class="dv">1</span>]</span>
<span id="cb1-10"><a href="#cb1-10" aria-hidden="true" tabindex="-1"></a> <span class="fu">print</span>(<span class="fu">kbl</span>(model.compare, <span class="at">caption=</span>setname) <span class="sc">%>%</span></span>
<span id="cb1-11"><a href="#cb1-11" aria-hidden="true" tabindex="-1"></a> <span class="fu">row_spec</span>(<span class="fu">which</span>(<span class="fu">abs</span>(model.compare<span class="sc">$</span>Nhatdiff)<span class="sc">></span><span class="dv">10</span>), <span class="at">background=</span><span class="st">"salmon"</span>))</span>
<span id="cb1-12"><a href="#cb1-12" aria-hidden="true" tabindex="-1"></a> <span class="fu">cat</span>(<span class="st">"</span><span class="sc">\n\n</span><span class="st">"</span>)</span>
<span id="cb1-13"><a href="#cb1-13" aria-hidden="true" tabindex="-1"></a>}</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<table>
<caption>
akepa
</caption>
<thead>
<tr>
<th style="text-align:left;">
models
</th>
<th style="text-align:right;">
lnl_R
</th>
<th style="text-align:right;">
lnl_MCDS
</th>
<th style="text-align:left;">
optimizer
</th>
<th style="text-align:right;">
p_R
</th>
<th style="text-align:right;">
p_MCDS
</th>
<th style="text-align:right;">
Nhat_R
</th>
<th style="text-align:right;">
Nhat_MCDS
</th>
<th style="text-align:right;">
Nhatdiff
</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align:left;">
~as.factor(Obs)
</td>
<td style="text-align:right;">
-373.0925
</td>
<td style="text-align:right;">
-373.0925
</td>
<td style="text-align:left;">
mrds (nlminb)
</td>
<td style="text-align:right;">
0.72
</td>
<td style="text-align:right;">
0.72
</td>
<td style="text-align:right;">
128.84
</td>
<td style="text-align:right;">
128.86
</td>
<td style="text-align:right;">
0.02
</td>
</tr>
</tbody>
</table>
<table>
<caption>
amakihi
</caption>
<thead>
<tr>
<th style="text-align:left;">
models
</th>
<th style="text-align:right;">
lnl_R
</th>
<th style="text-align:right;">
lnl_MCDS
</th>
<th style="text-align:left;">
optimizer
</th>
<th style="text-align:right;">
p_R
</th>
<th style="text-align:right;">
p_MCDS
</th>
<th style="text-align:right;">
Nhat_R
</th>
<th style="text-align:right;">
Nhat_MCDS
</th>
<th style="text-align:right;">
Nhatdiff
</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align:left;">
~as.factor(OBs) + HAS + MAS
</td>
<td style="text-align:right;">
-5396.835
</td>
<td style="text-align:right;">
-5396.836
</td>
<td style="text-align:left;">
mrds (nlminb)
</td>
<td style="text-align:right;">
0.34
</td>
<td style="text-align:right;">
0.34
</td>
<td style="text-align:right;">
3629.41
</td>
<td style="text-align:right;">
3629.99
</td>
<td style="text-align:right;">
0.02
</td>
</tr>
<tr>
<td style="text-align:left;">
~as.factor(OBs) + MAS
</td>
<td style="text-align:right;">
-5397.937
</td>
<td style="text-align:right;">
-5397.937
</td>
<td style="text-align:left;">
mrds (nlminb)
</td>
<td style="text-align:right;">
0.34
</td>
<td style="text-align:right;">
0.34
</td>
<td style="text-align:right;">
3624.30
</td>
<td style="text-align:right;">
3624.94
</td>
<td style="text-align:right;">
0.02
</td>
</tr>
<tr>
<td style="text-align:left;">
~as.factor(OBs) + HAS
</td>
<td style="text-align:right;">
-5397.039
</td>
<td style="text-align:right;">
-5397.039
</td>
<td style="text-align:left;">
mrds (nlminb)
</td>
<td style="text-align:right;">
0.34
</td>
<td style="text-align:right;">
0.34
</td>
<td style="text-align:right;">
3628.48
</td>
<td style="text-align:right;">
3629.01
</td>
<td style="text-align:right;">
0.01
</td>
</tr>
</tbody>
</table>
<table>
<caption>
capercaillie
</caption>
<thead>
<tr>
<th style="text-align:left;">
key
</th>
<th style="text-align:left;">
adj
</th>
<th style="text-align:right;">
nadj
</th>
<th style="text-align:right;">
lnl_R
</th>
<th style="text-align:right;">
lnl_MCDS
</th>
<th style="text-align:left;">
optimizer
</th>
<th style="text-align:right;">
p_R
</th>
<th style="text-align:right;">
p_MCDS
</th>
<th style="text-align:right;">
Nhat_R
</th>
<th style="text-align:right;">
Nhat_MCDS
</th>
<th style="text-align:right;">
Nhatdiff
</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align:left;">
unif
</td>
<td style="text-align:left;">
cos
</td>
<td style="text-align:right;">
0
</td>
<td style="text-align:right;">
-490.7870
</td>
<td style="text-align:right;">
-490.7870
</td>
<td style="text-align:left;">
mrds (nlminb)
</td>
<td style="text-align:right;">
1.00
</td>
<td style="text-align:right;">
1.00
</td>
<td style="text-align:right;">
112.00
</td>
<td style="text-align:right;">
112.00
</td>
<td style="text-align:right;">
0.00
</td>
</tr>
<tr>
<td style="text-align:left;">
unif
</td>
<td style="text-align:left;">
cos
</td>
<td style="text-align:right;">
1
</td>
<td style="text-align:right;">
-478.1321
</td>
<td style="text-align:right;">
-478.1321
</td>
<td style="text-align:left;">
mrds (nlminb)
</td>
<td style="text-align:right;">
0.59
</td>
<td style="text-align:right;">
0.59
</td>
<td style="text-align:right;">
188.93
</td>
<td style="text-align:right;">
188.93
</td>
<td style="text-align:right;">
0.00
</td>
</tr>
<tr>
<td style="text-align:left;">
unif
</td>
<td style="text-align:left;">
cos
</td>
<td style="text-align:right;">
2
</td>
<td style="text-align:right;">
-477.0771
</td>
<td style="text-align:right;">
-477.0765
</td>
<td style="text-align:left;">
MCDS.exe
</td>
<td style="text-align:right;">
0.68
</td>
<td style="text-align:right;">
0.68
</td>
<td style="text-align:right;">
164.27
</td>
<td style="text-align:right;">
164.21
</td>
<td style="text-align:right;">
-0.04
</td>
</tr>
<tr>
<td style="text-align:left;">
unif
</td>
<td style="text-align:left;">
cos
</td>
<td style="text-align:right;">
3
</td>
<td style="text-align:right;">
-477.0723
</td>
<td style="text-align:right;">
-477.0713
</td>
<td style="text-align:left;">
MCDS.exe
</td>
<td style="text-align:right;">
0.68
</td>
<td style="text-align:right;">
0.68
</td>
<td style="text-align:right;">
165.59
</td>
<td style="text-align:right;">
165.57
</td>
<td style="text-align:right;">
-0.01
</td>
</tr>
<tr>
<td style="text-align:left;">
hn
</td>
<td style="text-align:left;">
cos
</td>
<td style="text-align:right;">
0
</td>
<td style="text-align:right;">
-477.9525
</td>
<td style="text-align:right;">
-477.9525
</td>
<td style="text-align:left;">
mrds (nlminb)
</td>
<td style="text-align:right;">
0.61
</td>
<td style="text-align:right;">
0.61
</td>
<td style="text-align:right;">
182.76
</td>
<td style="text-align:right;">
182.76
</td>
<td style="text-align:right;">
0.00
</td>
</tr>
<tr>
<td style="text-align:left;">
hn
</td>
<td style="text-align:left;">
cos
</td>
<td style="text-align:right;">
1
</td>
<td style="text-align:right;">
-477.2076
</td>
<td style="text-align:right;">
-477.2057
</td>
<td style="text-align:left;">
MCDS.exe
</td>
<td style="text-align:right;">
0.66
</td>
<td style="text-align:right;">
0.66
</td>
<td style="text-align:right;">
169.09
</td>
<td style="text-align:right;">
169.04
</td>
<td style="text-align:right;">
-0.03
</td>
</tr>
<tr>
<td style="text-align:left;">
hn
</td>
<td style="text-align:left;">
cos
</td>
<td style="text-align:right;">
2
</td>
<td style="text-align:right;">
-477.0673
</td>
<td style="text-align:right;">
-477.0672
</td>
<td style="text-align:left;">
MCDS.exe
</td>
<td style="text-align:right;">
0.69
</td>
<td style="text-align:right;">
0.69
</td>
<td style="text-align:right;">
162.03
</td>
<td style="text-align:right;">
162.04
</td>
<td style="text-align:right;">
0.01
</td>
</tr>
<tr>
<td style="text-align:left;">
hn
</td>
<td style="text-align:left;">
herm
</td>
<td style="text-align:right;">
0
</td>
<td style="text-align:right;">
-477.9525
</td>
<td style="text-align:right;">
-477.9525
</td>
<td style="text-align:left;">
mrds (nlminb)
</td>
<td style="text-align:right;">
0.61
</td>
<td style="text-align:right;">
0.61
</td>
<td style="text-align:right;">
182.76
</td>
<td style="text-align:right;">
182.76
</td>
<td style="text-align:right;">
0.00
</td>
</tr>
<tr>
<td style="text-align:left;">
hn
</td>
<td style="text-align:left;">
herm
</td>
<td style="text-align:right;">
1
</td>
<td style="text-align:right;">
-477.2173
</td>
<td style="text-align:right;">
-477.2162
</td>
<td style="text-align:left;">
MCDS.exe
</td>
<td style="text-align:right;">
0.67
</td>
<td style="text-align:right;">
0.67
</td>
<td style="text-align:right;">
166.20
</td>
<td style="text-align:right;">
166.15
</td>
<td style="text-align:right;">
-0.03
</td>
</tr>
<tr>
<td style="text-align:left;">
hn
</td>
<td style="text-align:left;">
herm
</td>
<td style="text-align:right;">
2
</td>
<td style="text-align:right;">
-477.2205
</td>
<td style="text-align:right;">
NA
</td>
<td style="text-align:left;">
mrds (nlminb)
</td>
<td style="text-align:right;">
0.67
</td>
<td style="text-align:right;">
NA
</td>
<td style="text-align:right;">
166.04
</td>
<td style="text-align:right;">
NA
</td>
<td style="text-align:right;">
NA
</td>
</tr>
<tr>
<td style="text-align:left;">
hr
</td>
<td style="text-align:left;">
poly
</td>
<td style="text-align:right;">
0
</td>
<td style="text-align:right;">
-476.9369
</td>
<td style="text-align:right;">
-476.9369
</td>
<td style="text-align:left;">
mrds (nlminb)
</td>
<td style="text-align:right;">
0.70
</td>
<td style="text-align:right;">
0.70
</td>
<td style="text-align:right;">
159.40
</td>
<td style="text-align:right;">
159.45
</td>
<td style="text-align:right;">
0.03
</td>
</tr>
<tr>
<td style="text-align:left;">
hr
</td>
<td style="text-align:left;">
poly
</td>
<td style="text-align:right;">
1
</td>
<td style="text-align:right;">
-476.9394
</td>
<td style="text-align:right;">
-476.9395
</td>
<td style="text-align:left;">
mrds (nlminb)
</td>
<td style="text-align:right;">
0.70
</td>
<td style="text-align:right;">
0.70
</td>
<td style="text-align:right;">
159.56
</td>
<td style="text-align:right;">
159.46
</td>
<td style="text-align:right;">
-0.06
</td>
</tr>
<tr>
<td style="text-align:left;">
hr
</td>
<td style="text-align:left;">
poly
</td>
<td style="text-align:right;">
2
</td>
<td style="text-align:right;">
-476.8707
</td>
<td style="text-align:right;">
-476.7331
</td>
<td style="text-align:left;">
MCDS.exe
</td>
<td style="text-align:right;">
0.71
</td>
<td style="text-align:right;">
0.68
</td>
<td style="text-align:right;">
157.86
</td>
<td style="text-align:right;">
164.52
</td>
<td style="text-align:right;">
4.05
</td>
</tr>
</tbody>
</table>
<table>
<caption>
ClusterExercise
</caption>
<thead>
<tr>
<th style="text-align:left;">
models
</th>
<th style="text-align:right;">
lnl_R
</th>
<th style="text-align:right;">
lnl_MCDS
</th>
<th style="text-align:left;">
optimizer
</th>
<th style="text-align:right;">
p_R
</th>
<th style="text-align:right;">
p_MCDS
</th>
<th style="text-align:right;">
Nhat_R
</th>
<th style="text-align:right;">
Nhat_MCDS
</th>
<th style="text-align:right;">
Nhatdiff
</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align:left;">
~size
</td>
<td style="text-align:right;">
-157.4264
</td>
<td style="text-align:right;">
-158.1138
</td>
<td style="text-align:left;">
mrds (nlminb)
</td>
<td style="text-align:right;">
0.40
</td>
<td style="text-align:right;">
0.43
</td>
<td style="text-align:right;">
218.35
</td>
<td style="text-align:right;">
202.58
</td>
<td style="text-align:right;">
-7.78
</td>
</tr>
<tr>
<td style="text-align:left;">
~Cluster.strat
</td>
<td style="text-align:right;">
-158.2488
</td>
<td style="text-align:right;">
-158.9500
</td>
<td style="text-align:left;">
mrds (nlminb)
</td>
<td style="text-align:right;">
0.41
</td>
<td style="text-align:right;">
0.44
</td>
<td style="text-align:right;">
216.43
</td>
<td style="text-align:right;">
199.34
</td>
<td style="text-align:right;">
-8.57
</td>
</tr>
</tbody>
</table>
<table>
<caption>
cue_counting
</caption>
<thead>
<tr>
<th style="text-align:left;">
key
</th>
<th style="text-align:left;">
adj
</th>
<th style="text-align:right;">
nadj
</th>
<th style="text-align:right;">
lnl_R
</th>
<th style="text-align:right;">
lnl_MCDS
</th>
<th style="text-align:left;">
optimizer
</th>
<th style="text-align:right;">
p_R
</th>
<th style="text-align:right;">
p_MCDS
</th>
<th style="text-align:right;">
Nhat_R
</th>
<th style="text-align:right;">
Nhat_MCDS
</th>
<th style="text-align:right;">
Nhatdiff
</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align:left;">
unif
</td>
<td style="text-align:left;">
cos
</td>
<td style="text-align:right;">
0