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The tutorial example uses version 2.0.0, which doesn't require arguement --mash_db or --skip-ani-screen #621

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mcolpus opened this issue Jan 15, 2025 · 0 comments
Open

The tutorial example uses version 2.0.0, which doesn't require arguement --mash_db or --skip-ani-screen #621

mcolpus opened this issue Jan 15, 2025 · 0 comments
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error Help required for a GTDB-Tk error.

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mcolpus commented Jan 15, 2025

When following the tutorial https://ecogenomics.github.io/GTDBTk/examples/classify_wf.html, at the final step I get this error when using 2.4.0:

gtdbtk classify --genome_dir genomes/ --align_dir align/ --out_dir classify -x gz --cpus 2

gtdbtk classify: error: one of the arguments --skip_ani_screen --mash_db is required

I assume the tutorial just needs to be updated to include one of those arguments
@mcolpus mcolpus added the error Help required for a GTDB-Tk error. label Jan 15, 2025
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