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---
title: "Nordic Oikos 2018 -- workshop on GBIF data and R"
author: "Dag Endresen, https://orcid.org/0000-0002-2352-5497"
date: "February 18, 2018"
output:
html_document:
keep_md: false
---
<!-- index.html is generated from index.Rmd. Please edit that file -->
# Session 1: Quick intro to GBIF and biodiversity informatics
This session gives an introduction to the Global Biodiversity Information Facility ([GBIF](https://www.gbif.org)) and international standards for primary biodiversity information with focus on the [Darwin Core](http://rs.tdwg.org/dwc/terms/) standard.
* Biodiversity Information Facility ([GBIF](https://www.gbif.org)).
* [Darwin Core](http://rs.tdwg.org/dwc/terms/) standard ([Wieczorek *et al*. 2012](https://doi.org/10.1371/journal.pone.0029715)).
* [Darwin Core Archive](http://rs.tdwg.org/dwc/terms/guides/text/) ([DwC-A](https://en.wikipedia.org/wiki/Darwin_Core_Archive) data exchange document format).
* Core data types supported in GBIF: [Taxon](http://rs.gbif.org/core/dwc_taxon_2015-04-24.xml), [Occurrence](http://rs.gbif.org/core/dwc_occurrence_2015-07-02.xml), and [Sampling-event](http://rs.gbif.org/core/dwc_event_2016_06_21.xml)
* [GBIF Integrated Publishing Toolkit](https://www.gbif.org/ipt) ([IPT](https://github.com/gbif/ipt/wiki/IPT2ManualNotes.wiki) data exchange document format ([Robertson *et al.* 2014](https://doi.org/10.1371/journal.pone.0102623)).
* Spreadsheet template available at https://data.gbif.no/dwcexcel/ and [here](https://www.gbif.org/news/82852/new-darwin-core-spreadsheet-templates-simplify-data-preparation-and-publishing).
* [GBIF Taxon backbone](https://doi.org/10.15468/39omei), [taxize](https://github.com/ropensci/taxize), [taxize tutorial](https://ropensci.org/tutorials/taxize_tutorial/) ([more information](http://gbif.blogspot.no/search?q=backbone)).
## Workshop training materials
* [Slides](slides)
* [Brief R settings and hints](settings.html), ([R-script](settings.Rmd)) (more in [session 2](../s2_r_intro))
* [Brief intro to rgbif](gbif_intro.Rmd), ([R-script](gbif_intro.Rmd)) (more in [session 3](../s3_gbif_demo))
***
Navigate back to [GitHub.io project home](https://gbif-europe.github.io/nordic_oikos_2018_r/)
or [GitHub project source code](https://github.com/GBIF-Europe/nordic_oikos_2018_r)
pages.
***