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submit_test_gdas_gldas_dell.sh
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#!/bin/sh
#BSUB -o /gpfs/dell2/ptmp/Youlong.Xia/gdas_gldas.o%J
#BSUB -e /gpfs/dell2/ptmp/Youlong.Xia/gdas_gldas.o%J
#BSUB -P NLDAS-T2O
#BSUB -J jgdas_gldas_12
#BSUB -W 01:00
#BSUB -q dev
#BSUB -n 112 # number of tasks
#BSUB -R span[ptile=28] # tasks per node
#BSUB -R affinity[core(1):distribute=balance]
#BSUB -M 3072
#BSUB -extsched 'CRAYLINUX[]'
set -x
date
export NODES=4
export ntasks=112
export ptile=28
export threads=1
export launcher="mpirun -n"
export npe_gaussian=6
export npe_gldas=112
export APRUN_GAUSSIAN="$launcher $npe_gaussian"
export APRUN_GLDAS="$launcher $npe_gldas"
export CDATE=${CDATE:-2019110700}
#############################################################
export KMP_AFFINITY=disabled
export PDY=`date -u +%Y%m%d`
export PDY=`echo $CDATE | cut -c1-8`
export PDY1=`expr $PDY - 1`
export cyc=`echo $CDATE | cut -c9-10`
export cycle=t${cyc}z
set -xa
export PS4='$SECONDS + '
date
####################################
## Load theUtilities module
#####################################
module purge
module load EnvVars/1.0.2
module load ips/18.0.1.163
module load CFP/2.0.1
module load impi/18.0.1
module load lsf/10.1
module load prod_envir/1.0.2
module load prod_util/1.1.0
module load grib_util/1.1.0
module load NetCDF/4.5.0
###########################################
# Now set up environment
###########################################
module list
############################################
# GDAS META PRODUCT GENERATION
############################################
# set envir=prod or para to test with data in prod or para
# export envir=prod
export envir=para
export RUN=${RUN:-gdas}
export SENDCOM=YES
export KEEPDATA=YES
export job=gdas_gldas_${cyc}
export pid=${pid:-$$}
export jobid=${job}.${pid}
##############################################
# Define COM, COMOUTwmo, COMIN directories
##############################################
if [ $envir = "prod" ] ; then
# This setting is for testing with GDAS (production)
export HOMEgldas=/nwprod/gldas.${gldas_ver}
export COMIN=/gpfs/dell1/nco/ops/com/gfs/prod/${RUN}.${PDY} ### NCO PROD
export COMROOT=/gpfs/dell1/nco/ops/com
export DCOMROOT=/gpfs/dell1/nco/ops/dcom
elif [ $envir = "para" ] ; then
# This setting is for testing with GDAS (production)
export HOMEgldas=/gpfs/dell2/emc/retros/noscrub/$LOGNAME/GLDAS
export COMIN=/gpfs/dell1/nco/ops/com/gfs/prod/${RUN}.${PDY} ### NCO PROD
export COMROOT=/gpfs/dell1/nco/ops/com
export DCOMROOT=/gpfs/dell1/nco/ops/dcom
else
# export COMIN=/gpfs/dell3/ptmp/emc.glopara/ROTDIRS/prfv3rt1/${RUN}.${PDY}/${cyc}/nawips ### EMC PARA Realtime
# export COMINgdas=/gpfs/dell3/ptmp/emc.glopara/ROTDIRS/prfv3rt1/${RUN} ### EMC PARA Realtime
export workdir=/gpfs/dell2/emc/retros/noscrub/$LOGNAME
export HOMEgldas=$workdir/GLDAS
export COMROOT=$workdir/com
export DCOMROOT=$workdir/dcom
export COMINgdas=$COMROOT
export DCOMIN=$DCOMROOT
export COMIN=$workdir/comin
export COMOUT=$workdir/comout
fi
if [ $SENDCOM = YES ] ; then
mkdir -m 775 -p $COMOUT $COMOUTncdc $COMOUTukmet $COMOUTecmwf
fi
# Set user specific variables
#############################################################
#export NWTEST=/gpfs/hps/emc/global/noscrub/emc.glopara/svn/gfs/work
#export PARA_CONFIG=$NWTEST/gdas.${gdas_ver}/driver/para_config.gdas_gldas
#export JOBGLOBAL=$NWTEST/gdas.${gdas_ver}/jobs
export JOBGLOBAL=./jobs
#############################################################
# Execute job
#############################################################
echo $JOBGLOBAL/JGDAS_ATMOS_GLDAS
$JOBGLOBAL/JGDAS_ATMOS_GLDAS
exit