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citation_list.txt
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1. Carroll 1988 fungal endophytes in stems and leaves - from latent pathogen to mutualistic symbiont
2. Douglas 2007 conflict cheats and the persistence of symbioses REVIEW
3. Fesel & Zuccaro 2016 dissecting endophytic lifestyle along the parasitism-mutualism continuum REVIEW
4. Freeman & Rodreguez 1993 genetic conversion of a fungal plant pathogen to a nonpathogenic endophytic mutualist
5. Hall, R. A. & Noverr, M. C. Fungal interactions with the human host: exploring the spectrum of symbiosis. Current Opinion in Microbiology 40, 58–64 (2017).
6. Hardoim et al 2015 the hidden world within plants ecological and evolutionary considerations for defining functioning of microbial endophytes
7. Hibbett, D. S., Gilbert, L.-B. & Donoghue, M. J. Evolutionary instability of ectomycorrhizal symbioses in basidiomycetes. Nature 407, 506–508 (2000).
8. Johnson, N. C., Graham, J. H. & Smith, F. A. Functioning of mycorrhizal associations along the mutualism--parasitism continuum. New Phytol. 135, 575–585 (1997).
9. Jones, M. D. & Smith, S. E. Exploring functional definitions of mycorrhizas: are mycorrhizas always mutualisms? Canadian Journal of Botany 82, 1089–1109 (2004).
10. Kobayashi & Crouch 2009 bacterial fungal interactions - from pathogens to mutualistic endosymbionts REVIEW
11. Kohler et al 2015 convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
12. Koide, R. T., Sharda, J. N., Herr, J. R. & Malcolm, G. M. Ectomycorrhizal fungi and the biotrophy-saprotrophy continuum. New Phytologist 178, 230–233 (2008).
13. Lofgren et al 2018 fusarium graminearum - pathogen or endophyte of North American grasses
14. Melnyk, R. A. & Haney, C. H. Plant Pathology: Plasmid-powered evolutionary transitions. eLife 6, e33383 (2017).
15. Newton et al 2010 pathogenesis parasitism and mutualism in the trophic space of microbe-plant interactions REVIEW
16. Parker, B. J., Hrček, J., McLean, A. H. & Godfray, H. C. J. Genotype specificity among hosts, pathogens, and beneficial microbes influences the strength of symbiont-mediated protection. Evolution 71, 1222–1231 (2017).
17. Redman et al 2001 fungal symbiosis from mutualism to parasitism - who controls the outcome - host or invader
18. Savory, E. A. et al. Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management. eLife 6, (2017).Baldrian & Kohout 2017 interactions of saprotrophic fungi with tree roots can we observe the emergence of novel ectomycorrhizal fungi
19. Selosse et al 2018 time to re-think fungal ecology - fungal ecological niches are often prejudged COMMENTARY
20. Smith et al 2017 growing evidence for facultative biotrophy in saprotrophic fungi data from microcosm tests with 201 species of wood-decay basidiomycetes
21. Soto et al 2009 Mutualism versus pathogenesis - the give-and-take in plant-bacteria interactions
22. Soto et al 2011 pathogenic and mutualistic plant-bacteria interactions - ever increasing similarities REVIEW
23. Tuovinen et al 2015 no support for occurence of free-living Cladonia mycobionts in dead wood
24. Wedin et al 2004 Saprotrophy and lichenization as options for the same fungal species on different substrata