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LOAD_SITE_INFO.m
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%************************** Number of Species ****************************%
load './Temps/temp_variable.mat'...
'num_species' 'Sim_species' 'Sim_species_con'
% num_species : Number of species
% Sim_species = 1: Multi species
% Sim_species_con: Which species you would like to run
if Sim_species == 1
kspecies = num_species;
else % for the case you would like to simulate a selected species
kspecies = 5;
end
%***************************** Set Years *********************************%
load './Temps/temp_variable.mat'...
'working_forcings'
load(working_forcings,...
'year_crop');
Each_year = unique(year_crop)';
%************************ Set Initial Condition **************************%
load './Temps/temp_variable.mat'...
'root_init' 'root_init_litter'
Tsinit=root_init(:,3); % Initial soil temperature ['C]
Tslint=root_init_litter(1,3); % Initial litter temperature ['C]
volliqinit=root_init(:,2); % Initial soil moisture [-]
volliqliinit=root_init_litter(1,2); % Initial litter moisture [-]
%************ Site Independent Constant and Fixed Values *****************%
% CONVERSION FACTORS
CONSTANTS.umoltoWm2 = (2.17*10^5) / 10^6; % Radiation conversion
CONSTANTS.Wm2toumol = 1/CONSTANTS.umoltoWm2; % Radiation conversion
CONSTANTS.mmH2OtoMPa = 9.8066e-06; % Pressure conversion
% PHYSICAL CONSTANTS
CONSTANTS.R = 8.314; % [J mol^-1 K^-1]
CONSTANTS.R_kJ = CONSTANTS.R/1000; % [kJ mol^-1 K^-1]
CONSTANTS.Lv = 44000; % latent heat of vaporization [J/mol]
CONSTANTS.Lv_kg = 2260*1000; % Lv in [J / kg]
CONSTANTS.Lf = 6000; % latent heat of vaporization [J/mol]
CONSTANTS.Lf_kg = 3.337e5; % Lf in [J / kg]
CONSTANTS.cp_mol = 29.3; % specific heat of air at constant pressure [J/mol/K]
CONSTANTS.cp_JkgK = 1012; % [J/kg/K]
CONSTANTS.boltz = 5.6697 * 10^-8; % Stefan-Boltzmann constant [W/m^2/K^4]
CONSTANTS.vonk = 0.41; % von Karman constant
% The K?m? constant is often used in turbulence modeling,
% for instance in boundary-layer meteorology to calculate fluxes
% of momentum, heat and moisture from the atmosphere to the land surface.
% It is considered to be a universal (? = 0.41).
CONSTANTS.rho_dry_air = 1.2923; % [kg / m^3]
CONSTANTS.grav = 9.8; % [m / s^2]
CONSTANTS.Vw = 18; % Mols to kg conversion
CONSTANTS.cpl_JkgK = 1800; % specific heat capacity of leaves[J/kg/K]
CONSTANTS.rho_leaf = 600; % Density of Leaves [kg / m^3]
CONSTANTS.fPAR = 0.5; % [-] fraction incoming shortwave as PAR
load './Temps/temp_variable.mat'...
'days_step' 'mins_step' 'hours_step'
CONSTANTS.timestep = days_step*24*60+hours_step*60+mins_step; % [minutes]
CONSTANTS.dtime = CONSTANTS.timestep*60; % [s]
% ROOT CUT INFORMATION
% wilting point
CONSTANTS.wilpoint = -1.5; % Wilting Point 1.5 MPa
% embolism
CONSTANTS.PLCa = 2.146; % Parameter a embolism equation
CONSTANTS.PLCb = -1.238; % Parameter b embolism equation
% Layer to cut
load './Temps/temp_variable.mat'...
'set_para_root1'
CONSTANTS.nlc = set_para_root1{4,2}; % Number of layer to cut
VARIABLES.comroot = 0; % Initialize to zero the cut of roots
%*************************************************************************%
%********************** Site Specific Parameters *************************%
%*************************************************************************%
load './Temps/temp_variable.mat'...
'num_LAD1'
if isstr(num_LAD1) == 1
PARAMS.CanStruc.nl_can=str2num(num_LAD1); % # canopy layers
else
PARAMS.CanStruc.nl_can=(num_LAD1); % # canopy layers
end
%*************************************************************************%
% Canopy %
%*************************************************************************%
%********************* Independent of vegetation *************************%
% CANOPY STRUCTURE
load './Temps/temp_variable.mat'...
'para_canopy_crop_fixed'
if isempty(cell2mat(para_canopy_crop_fixed(3,2)))
PARAMS.CanStruc.hcan = cell2mat(para_canopy_crop_fixed(3,3)); % canopy height [m]
else
PARAMS.CanStruc.hcan = cell2mat(para_canopy_crop_fixed(3,2));
end
if isempty(cell2mat(para_canopy_crop_fixed(4,2)))
PARAMS.CanStruc.hobs = cell2mat(para_canopy_crop_fixed(4,3)); % observation height [m]
else
PARAMS.CanStruc.hobs = cell2mat(para_canopy_crop_fixed(4,2));
end
if isempty(cell2mat(para_canopy_crop_fixed(5,2)))
PARAMS.CanStruc.z0 = cell2mat(para_canopy_crop_fixed(5,3)); % canopy roughness length [m]
else
PARAMS.CanStruc.z0 = cell2mat(para_canopy_crop_fixed(5,2));
end
PARAMS.CanStruc.d0 = 2/3 * PARAMS.CanStruc.hcan; % canopy displacement height [m]
PARAMS.CanStruc.VAratio = 3/1000; % Ratio of volume to area [m]
% RADIATION
load './Temps/temp_variable.mat'...
'para_radiation'
if isempty(cell2mat(para_radiation(1,2)))
PARAMS.Rad.transmiss = cell2mat(para_radiation(1,3)); % atmospheric transmissivity
else
PARAMS.Rad.transmiss = cell2mat(para_radiation(1,2));
end
if isempty(cell2mat(para_radiation(2,2)))
PARAMS.Rad.epsv = cell2mat(para_radiation(2,3)); % vegetation emissivity
else
PARAMS.Rad.epsv = cell2mat(para_radiation(2,2));
end
if isempty(cell2mat(para_radiation(3,2)))
PARAMS.Rad.epss = cell2mat(para_radiation(3,3)); % soil emissivity
else
PARAMS.Rad.epss = cell2mat(para_radiation(3,2));
end
if isempty(cell2mat(para_radiation(4,2)))
PARAMS.Rad.epsa = cell2mat(para_radiation(4,3)); % atmospheric emissivity
else
PARAMS.Rad.epsa = cell2mat(para_radiation(4,2));
end
if isempty(cell2mat(para_radiation(5,2)))
PARAMS.Rad.xx = cell2mat(para_radiation(5,3)); % leaf angle dist param (Spherical is a good assumption (Shade and Golstein 2002)
else
PARAMS.Rad.xx = cell2mat(para_radiation(5,2));
end
if isempty(cell2mat(para_radiation(6,2)))
PARAMS.Rad.clump = cell2mat(para_radiation(6,3)); % leaf clumping parameter
else
PARAMS.Rad.clump = cell2mat(para_radiation(6,2));
end
if isempty(cell2mat(para_radiation(7,2)))
PARAMS.Rad.Kdf = cell2mat(para_radiation(7,3)); % extinction coeff for diffuse around 0.7 according to figure 15.2 (Campbell and Norman 1998)
else
PARAMS.Rad.Kdf = cell2mat(para_radiation(7,2));
end
if isempty(cell2mat(para_radiation(8,2)))
PARAMS.Rad.absorp_PAR = cell2mat(para_radiation(8,3)); % leaf absorptivity to PAR
else
PARAMS.Rad.absorp_PAR = cell2mat(para_radiation(8,2));
end
if isempty(cell2mat(para_radiation(9,2)))
PARAMS.Rad.absorp_NIR = cell2mat(para_radiation(9,3)); % leaf absorptivity to NIR
else
PARAMS.Rad.absorp_NIR = cell2mat(para_radiation(9,2));
end
if isempty(cell2mat(para_radiation(10,2)))
PARAMS.Rad.refl_PAR = cell2mat(para_radiation(10,3)); % PAR reflection coeff
else
PARAMS.Rad.refl_PAR = cell2mat(para_radiation(10,2));
end
if isempty(cell2mat(para_radiation(11,2)))
PARAMS.Rad.refl_NIR = cell2mat(para_radiation(11,3)); % NIR reflection coeff
else
PARAMS.Rad.refl_NIR = cell2mat(para_radiation(11,2));
end
if isempty(cell2mat(para_radiation(12,2)))
PARAMS.Rad.refl_soil = cell2mat(para_radiation(12,3)); % soil reflection coeff
else
PARAMS.Rad.refl_soil = cell2mat(para_radiation(12,2));
end
PARAMS.Rad.trans_PAR = 1 - PARAMS.Rad.absorp_PAR - PARAMS.Rad.refl_PAR;
PARAMS.Rad.trans_NIR = 1 - PARAMS.Rad.absorp_NIR - PARAMS.Rad.refl_NIR;
if isempty(cell2mat(para_radiation(13,2)))
PARAMS.Rad.refl_snow = cell2mat(para_radiation(13,3)); % Reflectivity of new snow.
else
PARAMS.Rad.refl_snow = cell2mat(para_radiation(13,2));
end
if isempty(cell2mat(para_radiation(14,2)))
PARAMS.Rad.refl_snow_old = cell2mat(para_radiation(14,3)); % How much reflectivity of snow decreases with age (per 12 days)
else
PARAMS.Rad.refl_snow_old = cell2mat(para_radiation(14,2));
end
PARAMS.LWmethod = 0; % Method to compute in LW_ATTENUATION FUNCITON LW 0. Initial Darren. 1. Corrected
PARAMS.retainLW = 0; % Factor to compute LW, what proportion of LW radiation emmited by a canopy
% layer, remains there instead of leaving. Only if LWmethod =1
PARAMS.LWcom = 3; % Computation of longwave incoming 1.DATA 2.Boltzman 3.Boltzman Corrected
% RESPIRATION
load './Temps/temp_variable.mat'...
'para_respiration' 'para_microenvironment'
if isempty(cell2mat(para_respiration(1,2)))
PARAMS.Resp.Ro = cell2mat(para_respiration(1,3)); % [umol / m^2 / s]
else
PARAMS.Resp.Ro = cell2mat(para_respiration(1,2));
end
if isempty(cell2mat(para_respiration(2,2)))
PARAMS.Resp.Q10 = cell2mat(para_respiration(2,3));
else
PARAMS.Resp.Q10 = cell2mat(para_respiration(2,2));
end
% Turbulence
if isempty(cell2mat(para_microenvironment(1,2)))
PARAMS.MicroEnv.Cd = cell2mat(para_microenvironment(1,3)); % Drag coefficient [-]
else
PARAMS.MicroEnv.Cd = cell2mat(para_microenvironment(1,2));
end
PARAMS.MicroEnv.alph = CONSTANTS.vonk/3; % mixing length parameter [-] / Katul et al (BLM, 2004, p. 84)
load './Temps/temp_variable.mat'...
'para_photosynthesisC3_crop1'
if isempty(cell2mat(para_photosynthesisC3_crop1(5,2)))
PARAMS.Photosyn.kn_canopy(1) = cell2mat(para_photosynthesisC3_crop1(5,3)); % Vertical Distribution of Photosynthetic Capacity
else
PARAMS.Photosyn.kn_canopy(1) = cell2mat(para_photosynthesisC3_crop1(5,2));
end
%*************************************************************************%
% SOIL %
%*************************************************************************%
load './Temps/temp_variable.mat'...
'num_root1' 'set_root_func' 'para_soil'
if isstr(num_root1) == 1
PARAMS.nl_soil=str2num(num_root1);
else
PARAMS.nl_soil=num_root1;
end
PARAMS.Soil.scaleza = cell2mat(set_root_func(1,2));
PARAMS.Soil.scalezb = cell2mat(set_root_func(2,2));
% SOIL PROPERTIES
if isempty(cell2mat(para_soil(1,2)))
VERTSTRUC.sand = cell2mat(para_soil(1,3));
else
VERTSTRUC.sand = cell2mat(para_soil(1,2));
end
if isempty(cell2mat(para_soil(2,2)))
VERTSTRUC.clay = cell2mat(para_soil(2,3));
else
VERTSTRUC.clay = cell2mat(para_soil(2,2));
end
if isempty(cell2mat(para_soil(3,2)))
PARAMS.Soil.Cd_soil = cell2mat(para_soil(3,3)); % soil drag coefficient [-]
else
PARAMS.Soil.Cd_soil = cell2mat(para_soil(3,2));
end
if isempty(cell2mat(para_soil(4,2)))
PARAMS.Soil.z0 = cell2mat(para_soil(4,3)); % soil surface roughness length [m]
else
PARAMS.Soil.z0 = cell2mat(para_soil(4,2));
end
PARAMS.Soil.alphCN=0.5; % Cranck Nicholson for Heat Solution
% CONSTANTS
PARAMS.Soil.smpmin = -1.e8; % restriction for min of soil poten. [mm]
PARAMS.Soil.wimp = 0.05; % water impremeable if porosity less than wimp [-]
PARAMS.Soil.scalek = 0.5; % length scale for the exponential decrease in Ksat [m]
% HEAT CAPACITIES [J / kg / K)]
% Dry Air
PARAMS.Soil.HC_air = 1.00464 * 10^3;
% Water
PARAMS.Soil.HC_liq = 4.188 * 10^3;
% Ice
PARAMS.Soil.HC_ice = 2.11727 * 10^3;
% DENSITIES [kg / m^3]
PARAMS.Soil.rho_liq = 1000;
PARAMS.Soil.rho_ice = 917;
% THERMAL CONDUCTIVITIES [W / m / K]
PARAMS.Soil.TK_liq = 0.6;
PARAMS.Soil.TK_ice = 2.29;
PARAMS.Soil.TK_air = 0.023;
% FREEZING TEMP OF FRESH WATER [K]
PARAMS.Soil.Tf = 273.16;
% FOR LITTER SNOW
PARAMS.Tcr_atm = 273; % Atmospheric temperature above which snow
PARAMS.Soil.HC_snow = 0.1; % Snow holding capacity of liquid water
PARAMS.Soil.rhosn_min = 50; % Snow compaction parameter [kg/m3]
PARAMS.Soil.fcomp = 0.6; %
PARAMS.Soil.rhod = 150.00; % Snow compaction parameter [kg/m3]
PARAMS.Soil.c1 = -1.4e4;
PARAMS.Soil.thetals = 0.9; % value of soil moisture litter at saturation
PARAMS.Soil.thetafc = 0.025; % Value of litter soil moisture at field capacity
PARAMS.Soil.thetatr = 0.18; % Value of soil moisture after which
% rl becomes negligible
PARAMS.Soil.psill = 35.3; % parameter to compute psi litter
PARAMS.Soil.bl = 2.42; % parameter to compute psi litter
PARAMS.Soil.bdl = 42.5; % Bulk density of litter [kg/m3]
PARAMS.Soil.rhowater = 1000; % Density of liquid water [1000 kg/m3]
PARAMS.Soil.TK_litter = 0.15; % Litter Thermal Conductivity [W/m/k] or [J/s/m/k]
PARAMS.Soil.TD_litter = 5.7*10^(-7); % Litter thermal diffusivity [m/s]
PARAMS.Soil.slfactor = 0.1; % Percentage above which is considered as snow for energy balance
PARAMS.Soil.VHC_litter = 0.3*10^(6); % Volumetric Heat Capacity of Litter [J/m3/K]
PARAMS.Soil.km = 0.0001;%0.00004; % parameter to compute drainage from litter
PARAMS.Soil.bm = 0.1;%2.3; % parameter to compute drainage from litter
PARAMS.Soil.thetamin = 0.0001; % value of soil moisture at which evaporation becomes negligible
PARAMS.Soil.ldif = 3.1*10^(-8);
PARAMS.Soil.sdif = 2.12*10^(-5);
PARAMS.Soil.kklitter = 1000; % [1/cm] Radiation attenuation
PARAMS.Soil.kksnow = 0.8; % [1/cm] Radiation attenuation
load './Temps/temp_variable.mat'...
'litter_depth'
if SWITCHES.litter
VARIABLES.SOIL.dzlit_m = litter_depth; % Litter thickness in [m]
else
VARIABLES.SOIL.dzlit_m = 0.; % Litter thickness in [m]
end
% ENTROPY COMPUTATION.
PARAMS.Entropy.c2 = 2.336;
PARAMS.Entropy.c3 = 0.26;
%*************************************************************************%
%********************* DEPENDENT OF VEGETATION TYPE **********************%
%*************************************************************************%
% kspecies = 1. Species 1
% kspecies = 2. Species 1+2
% kspecies = 3. Species 1+2+3
% kspecies = 4. Species 1+2+3+4
% kspecies = 5. Defined species
if (kspecies == 1 || kspecies == 5)
PARAMS.CanStruc.nspecies = 1; % Number of species
nspecies = 1;
elseif (kspecies == 2)
PARAMS.CanStruc.nspecies = 2; % Number of species
nspecies = 2;
elseif (kspecies == 3)
PARAMS.CanStruc.nspecies = 3; % Number of species
nspecies = 3;
elseif (kspecies == 4 )
PARAMS.CanStruc.nspecies = 4; % Number of species
nspecies = 4;
end
%**************************** Species 1 **********************************%
ii=0;
if (kspecies == 1 || kspecies == 2 || kspecies == 3 || kspecies == 4 || (kspecies == 5 && Sim_species_con == 1 ))
ii = 1;
elseif ((kspecies == 5 && Sim_species_con == 2) || (kspecies == 5 && Sim_species_con == 3) || (kspecies == 5 && Sim_species_con == 4))
ii = 0;
end
if ii ~= 0
load './Temps/temp_variable.mat'...
'para_leaf_crop1'
if isempty(cell2mat(para_leaf_crop1(1,2)))
PARAMS.CanStruc.LEfact(ii) = cell2mat(para_leaf_crop1(1,3)); % multiplicative factor for Fc and LE
% calculations (1 = fluxes from only
% one side of leaf, 2 = fluxes from
% both sides)
else
if isstr(cell2mat(para_leaf_crop1(1,2))) == 1
PARAMS.CanStruc.LEfact(ii) = str2num(cell2mat(para_leaf_crop1(1,2)));
else
PARAMS.CanStruc.LEfact(ii) = cell2mat(para_leaf_crop1(1,2));
end
end
if isempty(cell2mat(para_leaf_crop1(2,2)))
PARAMS.CanStruc.Hfact(ii) = cell2mat(para_leaf_crop1(2,3)); % multiplicative factor for H and LW
% calculations (1 = fluxes from only
% one side of leaf, 2 = fluxes from
% both sides)
else
if isstr(cell2mat(para_leaf_crop1(2,2))) == 1
PARAMS.CanStruc.Hfact(ii) = str2num(cell2mat(para_leaf_crop1(2,2)));
else
PARAMS.CanStruc.Hfact(ii) = cell2mat(para_leaf_crop1(2,2));
end
end
if isempty(cell2mat(para_leaf_crop1(3,2)))
PARAMS.CanStruc.LWfact(ii) = cell2mat(para_leaf_crop1(3,3));
else
if isstr(cell2mat(para_leaf_crop1(3,2))) == 1
PARAMS.CanStruc.LWfact(ii) = str2num(cell2mat(para_leaf_crop1(3,2)));
else
PARAMS.CanStruc.LWfact(ii) = cell2mat(para_leaf_crop1(3,2));
end
end
% CANOPY STRUCTURE
if isempty(cell2mat(para_leaf_crop1(4,2)))
PARAMS.CanStruc.leaftype(ii) = cell2mat(para_leaf_crop1(4,3)); % 1 = broad leaves, 2 = needles
else
if isstr(cell2mat(para_leaf_crop1(4,2))) == 1
PARAMS.CanStruc.leaftype(ii) = str2num(cell2mat(para_leaf_crop1(4,2)));
else
PARAMS.CanStruc.leaftype(ii) = cell2mat(para_leaf_crop1(4,2));
end
end
load './Temps/temp_variable.mat'...
'para_canopy_crop1' 'para_leaf_crop11'
if isempty(cell2mat(para_canopy_crop1(1,2)))
PARAMS.CanStruc.ld(ii) = cell2mat(para_canopy_crop1(1,3)); % leaf width or needle diameter [m]
else
PARAMS.CanStruc.ld(ii) = cell2mat(para_canopy_crop1(1,2));
end
if isempty(cell2mat(para_canopy_crop1(2,2)))
PARAMS.CanStruc.lw(ii) = cell2mat(para_canopy_crop1(2,3)); % shoot diameter for conifers
% leaf width for broadleaved vegetation (= ld)
else
PARAMS.CanStruc.lw(ii) = cell2mat(para_canopy_crop1(2,2));
end
% PARAMS WEIBULL / Dongkook: You can ignore below - Just keep here
PARAMS.CanStruc.beta(ii) = 6.6533;%2.1681;
PARAMS.CanStruc.alpha(ii) = 0.8017;%0.5831;
% Smax = maximum h2o storage capacity for foliage [mm/LAI unit]
if isempty(cell2mat(para_leaf_crop11(1,2)))
PARAMS.CanStruc.Smax = cell2mat(para_leaf_crop11(1,3));
else
PARAMS.CanStruc.Smax = cell2mat(para_leaf_crop11(1,2));
end
load './Temps/temp_variable.mat'...
'para_canopy_crop_fixed'
if isempty(cell2mat(para_canopy_crop_fixed(1,2)))
PARAMS.CanStruc.Ffact = cell2mat(para_canopy_crop_fixed(1,3)); % max fraction of canopy that can be wet
else
PARAMS.CanStruc.Ffact = cell2mat(para_canopy_crop_fixed(1,2));
end
if isempty(cell2mat(para_canopy_crop_fixed(2,2)))
PARAMS.CanStruc.pptintfact = cell2mat(para_canopy_crop_fixed(2,3)); % precip extinction coefficient
else
PARAMS.CanStruc.pptintfact = cell2mat(para_canopy_crop_fixed(2,2));
end
% PHOTOSYNTHESIS
load './Temps/temp_variable.mat'...
'fullpath_forcings' 'para_canopy_crop1' 'para_photosynthesisC3_crop1' 'para_photosynthesisC4_crop1' 'ph_type1'
load (fullpath_forcings)
PARAMS.Photosyn.ph_type(ii) = ph_type1;
if PARAMS.Photosyn.ph_type(ii) == 1
% C3 Photosynthesis Parameters
if isempty(cell2mat(para_photosynthesisC3_crop1(1,2)))
PARAMS.Photosyn.beta_ph_C3(ii) = cell2mat(para_photosynthesisC3_crop1(1,3));
else
PARAMS.Photosyn.beta_ph_C3(ii) = cell2mat(para_photosynthesisC3_crop1(1,2));
end
if isempty(cell2mat(para_photosynthesisC3_crop1(2,2)))
PARAMS.Photosyn.Vcmax25_C3{ii} = cell2mat(para_photosynthesisC3_crop1(2,3))*ones(1,size(Ta_crop,1)); % [umol / m^2 / s]
else
PARAMS.Photosyn.Vcmax25_C3{ii} = cell2mat(para_photosynthesisC3_crop1(2,2))*ones(1,size(Ta_crop,1));
end
if isempty(cell2mat(para_photosynthesisC3_crop1(3,2)))
PARAMS.Photosyn.Jmax25_C3{ii} = cell2mat(para_photosynthesisC3_crop1(3,3))*ones(1,size(Ta_crop,1)); % [umol / m^2 / s]
else
PARAMS.Photosyn.Jmax25_C3{ii} = cell2mat(para_photosynthesisC3_crop1(3,2))*ones(1,size(Ta_crop,1));
end
if isempty(cell2mat(para_photosynthesisC3_crop1(4,2)))
PARAMS.Photosyn.Rd25{ii} = cell2mat(para_photosynthesisC3_crop1(4,3))*ones(1,size(Ta_crop,1)); % [umol / m^2 / s]
else
PARAMS.Photosyn.Rd25{ii} = cell2mat(para_photosynthesisC3_crop1(4,2))*ones(1,size(Ta_crop,1));
end
if isempty(cell2mat(para_photosynthesisC3_crop1(5,2)))
PARAMS.Photosyn.kn_canopy(1) = cell2mat(para_photosynthesisC3_crop1(5,3)); % Vertical Distribution of Photosynthetic Capacity
else
PARAMS.Photosyn.kn_canopy(1) = cell2mat(para_photosynthesisC3_crop1(5,2));
end
% C4 Photosynthesis Parameters
PARAMS.Photosyn.Vmax_C4(ii) = NaN;
PARAMS.Photosyn.Rd_C4(ii) = NaN;
PARAMS.Photosyn.Q10_C4(ii) = NaN;
PARAMS.Photosyn.kk_C4(ii) = NaN;
PARAMS.Photosyn.theta_C4(ii) = NaN;
PARAMS.Photosyn.beta_C4(ii) = NaN;
PARAMS.Photosyn.al_C4(ii) = NaN;
else
% C3 Photosynthesis Parameters
PARAMS.Photosyn.beta_ph_C3(ii) = NaN;
PARAMS.Photosyn.Vcmax25_C3{ii} = NaN;
PARAMS.Photosyn.Jmax25_C3{ii} = NaN;
PARAMS.Photosyn.Rd25{ii} = NaN;
% C4 Photosynthesis Parameters
if isempty(cell2mat(para_photosynthesisC4_crop1(1,2)))
PARAMS.Photosyn.Vmax_C4(ii) = cell2mat(para_photosynthesisC4_crop1(1,3));
else
PARAMS.Photosyn.Vmax_C4(ii) = cell2mat(para_photosynthesisC4_crop1(1,2));
end
if isempty(cell2mat(para_photosynthesisC4_crop1(2,2)))
PARAMS.Photosyn.Rd_C4(ii) = cell2mat(para_photosynthesisC4_crop1(2,3));
else
PARAMS.Photosyn.Rd_C4(ii) = cell2mat(para_photosynthesisC4_crop1(2,2));
end
if isempty(cell2mat(para_photosynthesisC4_crop1(3,2)))
PARAMS.Photosyn.Q10_C4(ii) = cell2mat(para_photosynthesisC4_crop1(3,3));
else
PARAMS.Photosyn.Q10_C4(ii) = cell2mat(para_photosynthesisC4_crop1(3,2));
end
if isempty(cell2mat(para_photosynthesisC4_crop1(4,2)))
PARAMS.Photosyn.kk_C4(ii) = cell2mat(para_photosynthesisC4_crop1(4,3));
else
PARAMS.Photosyn.kk_C4(ii) = cell2mat(para_photosynthesisC4_crop1(4,2));
end
if isempty(cell2mat(para_photosynthesisC4_crop1(5,2)))
PARAMS.Photosyn.theta_C4(ii) = cell2mat(para_photosynthesisC4_crop1(5,3));
else
PARAMS.Photosyn.theta_C4(ii) = cell2mat(para_photosynthesisC4_crop1(5,2));
end
if isempty(cell2mat(para_photosynthesisC4_crop1(6,2)))
PARAMS.Photosyn.beta_C4(ii) = cell2mat(para_photosynthesisC4_crop1(6,3));
else
PARAMS.Photosyn.beta_C4(ii) = cell2mat(para_photosynthesisC4_crop1(6,2));
end
if isempty(cell2mat(para_photosynthesisC4_crop1(7,2)))
PARAMS.Photosyn.al_C4(ii) = cell2mat(para_photosynthesisC4_crop1(7,3));
else
PARAMS.Photosyn.al_C4(ii) = cell2mat(para_photosynthesisC4_crop1(7,2));
end
if isempty(cell2mat(para_photosynthesisC4_crop1(8,2)))
PARAMS.Photosyn.kn_canopy(1) = cell2mat(para_photosynthesisC4_crop1(8,3)); % Vertical Distribution of Photosynthetic Capacity
else
PARAMS.Photosyn.kn_canopy(1) = cell2mat(para_photosynthesisC4_crop1(8,2));
end
end
PARAMS.Photosyn.Oi(ii) = 210; % Intercellular oxygen concentration [mmol / mol]
% STOMATAL CONDUCTANCE
load './Temps/temp_variable.mat'...
'para_conductance_crop1'
% Ball-Berry
if isempty(cell2mat(para_conductance_crop1(1,2)))
PARAMS.StomCond.mslope(ii) = cell2mat(para_conductance_crop1(1,3)); % slope parameter in BB model [-] (Leakey: m=10.6 (ambient); m=10.9 (elevated))
else
PARAMS.StomCond.mslope(ii) = cell2mat(para_conductance_crop1(1,2));
end
if isempty(cell2mat(para_conductance_crop1(2,2)))
PARAMS.StomCond.bint(ii) = cell2mat(para_conductance_crop1(2,3)); % intercept parameter in BB model [mol/m^2/s] (Leakey: b=0.008 (ambient); b=0.007 (elevated))
else
PARAMS.StomCond.bint(ii) = cell2mat(para_conductance_crop1(2,2));
end
% (Tuzet et al, PCE 2003)
if isempty(cell2mat(para_conductance_crop1(3,2)))
PARAMS.StomCond.sfm(ii) = cell2mat(para_conductance_crop1(3,3)); % sensitivity parameter for initial decrease in leaf potential [-]
else
PARAMS.StomCond.sfm(ii) = cell2mat(para_conductance_crop1(3,2));
end
if isempty(cell2mat(para_conductance_crop1(4,2)))
PARAMS.StomCond.psifm(ii) = cell2mat(para_conductance_crop1(4,3)); % leaf potential at which half of the hydraulic conductance is lost [MPa]
else
PARAMS.StomCond.psifm(ii) = cell2mat(para_conductance_crop1(4,2));
end
% Conductivities
if isempty(cell2mat(para_conductance_crop1(5,2)))
PARAMS.Soil.K_rad(ii) = cell2mat(para_conductance_crop1(5,3)); % radial conductivity of the root system [s^-1]
else
PARAMS.Soil.K_rad(ii) = cell2mat(para_conductance_crop1(5,2));
end
if isempty(cell2mat(para_conductance_crop1(6,2)))
PARAMS.Soil.K_axs(ii) = cell2mat(para_conductance_crop1(6,3)); % axial specific conductivity of the root system [mm/s]
else
PARAMS.Soil.K_axs(ii) = cell2mat(para_conductance_crop1(6,2));
end
if isempty(cell2mat(para_conductance_crop1(7,2)))
PARAMS.Soil.kpar_ax(ii) = cell2mat(para_conductance_crop1(7,3));
else
PARAMS.Soil.kpar_ax(ii) = cell2mat(para_conductance_crop1(7,2));
end
if isempty(cell2mat(para_conductance_crop1(8,2)))
PARAMS.StomCond.Rp(ii) = cell2mat(para_conductance_crop1(8,3));
else
PARAMS.StomCond.Rp(ii) = cell2mat(para_conductance_crop1(8,2));
end
% ROOT SOIL
% HR
load './Temps/temp_variable.mat'...
'HR'
SWITCHES.HR_on(ii) = HR; % Hydraulic Redistribution 1. Yes, 0. No
% root structure
load './Temps/temp_variable.mat'...
'set_para_root1'
PARAMS.Soil.z50f(ii) = cell2mat(set_para_root1(2,2)); % From Ameriflux site description
PARAMS.Soil.z95f(ii) = cell2mat(set_para_root1(3,2)); % From Ameriflux site description
PARAMS.Soil.z50t(ii) = cell2mat(set_para_root1(2,2));
PARAMS.Soil.z95t(ii) = cell2mat(set_para_root1(3,2));
PARAMS.Soil.maxrootdepth(ii) = cell2mat(set_para_root1(1,2));
end
%**************************** Species 2 **********************************%
ii=0;
if (kspecies == 5 && Sim_species_con == 2)
ii = 1;
elseif (kspecies == 2 || kspecies == 3 || kspecies == 4)
ii = 2;
elseif ((kspecies == 5 && Sim_species_con == 1) || (kspecies == 5 && Sim_species_con == 3) || (kspecies == 5 && Sim_species_con == 4))
ii = 0;
end
if ii~= 0
load './Temps/temp_variable.mat'...
'para_leaf_crop2'
if isempty(cell2mat(para_leaf_crop2(1,2)))
PARAMS.CanStruc.LEfact(ii) = cell2mat(para_leaf_crop2(1,3)); % multiplicative factor for Fc and LE
% calculations (1 = fluxes from only
% one side of leaf, 2 = fluxes from
% both sides)
else
if isstr(cell2mat(para_leaf_crop2(1,2))) == 1
PARAMS.CanStruc.LEfact(ii) = str2num(cell2mat(para_leaf_crop2(1,2)));
else
PARAMS.CanStruc.LEfact(ii) = cell2mat(para_leaf_crop2(1,2));
end
end
if isempty(cell2mat(para_leaf_crop2(2,2)))
PARAMS.CanStruc.Hfact(ii) = cell2mat(para_leaf_crop2(2,3)); % multiplicative factor for H and LW
% calculations (1 = fluxes from only
% one side of leaf, 2 = fluxes from
% both sides)
else
if isstr(cell2mat(para_leaf_crop2(2,2))) == 1
PARAMS.CanStruc.Hfact(ii) = str2num(cell2mat(para_leaf_crop2(2,2)));
else
PARAMS.CanStruc.Hfact(ii) = cell2mat(para_leaf_crop2(2,2));
end
end
if isempty(cell2mat(para_leaf_crop2(3,2)))
PARAMS.CanStruc.LWfact(ii) = cell2mat(para_leaf_crop2(3,3));
else
if isstr(cell2mat(para_leaf_crop2(3,2))) == 1
PARAMS.CanStruc.LWfact(ii) = str2num(cell2mat(para_leaf_crop2(3,2)));
else
PARAMS.CanStruc.LWfact(ii) = cell2mat(para_leaf_crop2(3,2));
end
end
% CANOPY STRUCTURE
if isempty(cell2mat(para_leaf_crop2(4,2)))
PARAMS.CanStruc.leaftype(ii) = cell2mat(para_leaf_crop2(4,3)); % 1 = broad leaves, 2 = needles
else
if isstr(cell2mat(para_leaf_crop2(4,2))) == 1
PARAMS.CanStruc.leaftype(ii) = str2num(cell2mat(para_leaf_crop2(4,2)));
else
PARAMS.CanStruc.leaftype(ii) = cell2mat(para_leaf_crop2(4,2));
end
end
load './Temps/temp_variable.mat'...
'para_canopy_crop2' 'para_leaf_crop22'
if isempty(cell2mat(para_canopy_crop2(1,2)))
PARAMS.CanStruc.ld(ii) = cell2mat(para_canopy_crop2(1,3)); % leaf width or needle diameter [m]
else
PARAMS.CanStruc.ld(ii) = cell2mat(para_canopy_crop2(1,2));
end
if isempty(cell2mat(para_canopy_crop2(2,2)))
PARAMS.CanStruc.lw(ii) = cell2mat(para_canopy_crop2(2,3)); % shoot diameter for conifers
% leaf width for broadleaved vegetation (= ld)
else
PARAMS.CanStruc.lw(ii) = cell2mat(para_canopy_crop2(2,2));
end
% PARAMS WEIBULL / Dongkook: You can ignore below - Just keep here
PARAMS.CanStruc.beta(ii) = 2.1681;%2.1681;
PARAMS.CanStruc.alpha(ii) = 0.5831;
% Smax = maximum h2o storage capacity for foliage [mm/LAI unit]
if isempty(cell2mat(para_leaf_crop22(1,2)))
PARAMS.CanStruc.Smax = cell2mat(para_leaf_crop22(1,3));
else
PARAMS.CanStruc.Smax = cell2mat(para_leaf_crop22(1,2));
end
load './Temps/temp_variable.mat'...
'para_canopy_crop_fixed'
if isempty(cell2mat(para_canopy_crop_fixed(1,2)))
PARAMS.CanStruc.Ffact = cell2mat(para_canopy_crop_fixed(1,3)); % max fraction of canopy that can be wet
else
PARAMS.CanStruc.Ffact = cell2mat(para_canopy_crop_fixed(1,2));
end
if isempty(cell2mat(para_canopy_crop_fixed(2,2)))
PARAMS.CanStruc.pptintfact = cell2mat(para_canopy_crop_fixed(2,3)); % precip extinction coefficient
else
PARAMS.CanStruc.pptintfact = cell2mat(para_canopy_crop_fixed(2,2));
end
% PHOTOSYNTHESIS
load './Temps/temp_variable.mat'...
'fullpath_forcings' 'para_canopy_crop2' 'para_photosynthesisC3_crop2' 'para_photosynthesisC4_crop2' 'ph_type2'
load (fullpath_forcings)
PARAMS.Photosyn.ph_type(ii) = ph_type2;
if PARAMS.Photosyn.ph_type(ii) == 1
% C3 Photosynthesis Parameters
if isempty(cell2mat(para_photosynthesisC3_crop2(1,2)))
PARAMS.Photosyn.beta_ph_C3(ii) = cell2mat(para_photosynthesisC3_crop2(1,3));
else
PARAMS.Photosyn.beta_ph_C3(ii) = cell2mat(para_photosynthesisC3_crop2(1,2));
end
if isempty(cell2mat(para_photosynthesisC3_crop2(2,2)))
PARAMS.Photosyn.Vcmax25_C3{ii} = cell2mat(para_photosynthesisC3_crop2(2,3))*ones(1,size(Ta_crop,1)); % [umol / m^2 / s]
else
PARAMS.Photosyn.Vcmax25_C3{ii} = cell2mat(para_photosynthesisC3_crop2(2,2))*ones(1,size(Ta_crop,1));
end
if isempty(cell2mat(para_photosynthesisC3_crop2(3,2)))
PARAMS.Photosyn.Jmax25_C3{ii} = cell2mat(para_photosynthesisC3_crop2(3,3))*ones(1,size(Ta_crop,1)); % [umol / m^2 / s]
else
PARAMS.Photosyn.Jmax25_C3{ii} = cell2mat(para_photosynthesisC3_crop2(3,2))*ones(1,size(Ta_crop,1));
end
if isempty(cell2mat(para_photosynthesisC3_crop2(4,2)))
PARAMS.Photosyn.Rd25{ii} = cell2mat(para_photosynthesisC3_crop2(4,3))*ones(1,size(Ta_crop,1)); % [umol / m^2 / s]
else
PARAMS.Photosyn.Rd25{ii} = cell2mat(para_photosynthesisC3_crop2(4,2))*ones(1,size(Ta_crop,1));
end
% C4 Photosynthesis Parameters
PARAMS.Photosyn.Vmax_C4(ii) = NaN;
PARAMS.Photosyn.Rd_C4(ii) = NaN;
PARAMS.Photosyn.Q10_C4(ii) = NaN;
PARAMS.Photosyn.kk_C4(ii) = NaN;
PARAMS.Photosyn.theta_C4(ii) = NaN;
PARAMS.Photosyn.beta_C4(ii) = NaN;
PARAMS.Photosyn.al_C4(ii) = NaN;
else
% C3 Photosynthesis Parameters
PARAMS.Photosyn.beta_ph_C3(ii) = NaN;
PARAMS.Photosyn.Vcmax25_C3{ii} = NaN;
PARAMS.Photosyn.Jmax25_C3{ii} = NaN;
PARAMS.Photosyn.Rd25{ii} = NaN;
% C4 Photosynthesis Parameters
if isempty(cell2mat(para_photosynthesisC4_crop2(1,2)))
PARAMS.Photosyn.Vmax_C4(ii) = cell2mat(para_photosynthesisC4_crop2(1,3));
else
PARAMS.Photosyn.Vmax_C4(ii) = cell2mat(para_photosynthesisC4_crop2(1,2));
end
if isempty(cell2mat(para_photosynthesisC4_crop2(2,2)))
PARAMS.Photosyn.Rd_C4(ii) = cell2mat(para_photosynthesisC4_crop2(2,3));
else
PARAMS.Photosyn.Rd_C4(ii) = cell2mat(para_photosynthesisC4_crop2(2,2));
end
if isempty(cell2mat(para_photosynthesisC4_crop2(3,2)))
PARAMS.Photosyn.Q10_C4(ii) = cell2mat(para_photosynthesisC4_crop2(3,3));
else
PARAMS.Photosyn.Q10_C4(ii) = cell2mat(para_photosynthesisC4_crop2(3,2));
end
if isempty(cell2mat(para_photosynthesisC4_crop2(4,2)))
PARAMS.Photosyn.kk_C4(ii) = cell2mat(para_photosynthesisC4_crop2(4,3));
else
PARAMS.Photosyn.kk_C4(ii) = cell2mat(para_photosynthesisC4_crop2(4,2));
end
if isempty(cell2mat(para_photosynthesisC4_crop2(5,2)))
PARAMS.Photosyn.theta_C4(ii) = cell2mat(para_photosynthesisC4_crop2(5,3));
else
PARAMS.Photosyn.theta_C4(ii) = cell2mat(para_photosynthesisC4_crop2(5,2));
end
if isempty(cell2mat(para_photosynthesisC4_crop2(6,2)))
PARAMS.Photosyn.beta_C4(ii) = cell2mat(para_photosynthesisC4_crop2(6,3));
else
PARAMS.Photosyn.beta_C4(ii) = cell2mat(para_photosynthesisC4_crop2(6,2));
end
if isempty(cell2mat(para_photosynthesisC4_crop2(7,2)))
PARAMS.Photosyn.al_C4(ii) = cell2mat(para_photosynthesisC4_crop2(7,3));
else
PARAMS.Photosyn.al_C4(ii) = cell2mat(para_photosynthesisC4_crop2(7,2));
end
end
PARAMS.Photosyn.Oi(ii) = 210; % Intercellular oxygen concentration [mmol / mol]
% STOMATAL CONDUCTANCE
load './Temps/temp_variable.mat'...
'para_conductance_crop2'
% Ball-Berry
if isempty(cell2mat(para_conductance_crop2(1,2)))
PARAMS.StomCond.mslope(ii) = cell2mat(para_conductance_crop2(1,3)); % slope parameter in BB model [-] (Leakey: m=10.6 (ambient); m=10.9 (elevated))
else
PARAMS.StomCond.mslope(ii) = cell2mat(para_conductance_crop2(1,2));
end
if isempty(cell2mat(para_conductance_crop2(2,2)))
PARAMS.StomCond.bint(ii) = cell2mat(para_conductance_crop2(2,3)); % intercept parameter in BB model [mol/m^2/s] (Leakey: b=0.008 (ambient); b=0.007 (elevated))
else
PARAMS.StomCond.bint(ii) = cell2mat(para_conductance_crop2(2,2));
end
% (Tuzet et al, PCE 2003)
if isempty(cell2mat(para_conductance_crop2(3,2)))
PARAMS.StomCond.sfm(ii) = cell2mat(para_conductance_crop2(3,3)); % sensitivity parameter for initial decrease in leaf potential [-]
else
PARAMS.StomCond.sfm(ii) = cell2mat(para_conductance_crop2(3,2));
end
if isempty(cell2mat(para_conductance_crop2(4,2)))
PARAMS.StomCond.psifm(ii) = cell2mat(para_conductance_crop2(4,3)); % leaf potential at which half of the hydraulic conductance is lost [MPa]
else
PARAMS.StomCond.psifm(ii) = cell2mat(para_conductance_crop2(4,2));
end
% Conductivities
if isempty(cell2mat(para_conductance_crop2(5,2)))
PARAMS.Soil.K_rad(ii) = cell2mat(para_conductance_crop2(5,3)); % radial conductivity of the root system [s^-1]
else
PARAMS.Soil.K_rad(ii) = cell2mat(para_conductance_crop2(5,2));
end
if isempty(cell2mat(para_conductance_crop2(6,2)))
PARAMS.Soil.K_axs(ii) = cell2mat(para_conductance_crop2(6,3)); % axial specific conductivity of the root system [mm/s]
else
PARAMS.Soil.K_axs(ii) = cell2mat(para_conductance_crop2(6,2));
end
if isempty(cell2mat(para_conductance_crop2(7,2)))
PARAMS.Soil.kpar_ax(ii) = cell2mat(para_conductance_crop2(7,3));
else
PARAMS.Soil.kpar_ax(ii) = cell2mat(para_conductance_crop2(7,2));
end
if isempty(cell2mat(para_conductance_crop2(8,2)))
PARAMS.StomCond.Rp(ii) = cell2mat(para_conductance_crop2(8,3));
else
PARAMS.StomCond.Rp(ii) = cell2mat(para_conductance_crop2(8,2));
end
% ROOT SOIL
% HR
load './Temps/temp_variable.mat'...
'HR'
SWITCHES.HR_on(ii) = HR; % Hydraulic Redistribution 1. Yes, 0. No
% root structure
load './Temps/temp_variable.mat'...
'set_para_root2'
PARAMS.Soil.z50f(ii) = cell2mat(set_para_root2(2,2)); % From Ameriflux site description
PARAMS.Soil.z95f(ii) = cell2mat(set_para_root2(3,2)); % From Ameriflux site description
PARAMS.Soil.z50t(ii) = cell2mat(set_para_root2(2,2));
PARAMS.Soil.z95t(ii) = cell2mat(set_para_root2(3,2));
PARAMS.Soil.maxrootdepth(ii) = cell2mat(set_para_root2(1,2));
end
%**************************** Species 3 **********************************%
ii=0;
if (kspecies == 5 && Sim_species_con == 3)
ii = 1;
elseif (kspecies == 3 || kspecies == 4)
ii = 3;
elseif ((kspecies == 5 && Sim_species_con == 1) || (kspecies == 5 && Sim_species_con == 2) || (kspecies == 5 && Sim_species_con == 4))
ii = 0;
end
if ii~=0
load './Temps/temp_variable.mat'...
'para_leaf_crop3'
if isempty(cell2mat(para_leaf_crop3(1,2)))
PARAMS.CanStruc.LEfact(ii) = cell2mat(para_leaf_crop3(1,3)); % multiplicative factor for Fc and LE
% calculations (1 = fluxes from only
% one side of leaf, 2 = fluxes from
% both sides)
else
if isstr(cell2mat(para_leaf_crop3(1,2))) == 1
PARAMS.CanStruc.LEfact(ii) = str2num(cell2mat(para_leaf_crop3(1,2)));
else
PARAMS.CanStruc.LEfact(ii) = cell2mat(para_leaf_crop3(1,2));
end
end
if isempty(cell2mat(para_leaf_crop3(2,2)))
PARAMS.CanStruc.Hfact(ii) = cell2mat(para_leaf_crop3(2,3)); % multiplicative factor for H and LW
% calculations (1 = fluxes from only
% one side of leaf, 2 = fluxes from
% both sides)
else
if isstr(cell2mat(para_leaf_crop3(2,2))) == 1
PARAMS.CanStruc.Hfact(ii) = str2num(cell2mat(para_leaf_crop3(2,2)));
else
PARAMS.CanStruc.Hfact(ii) = cell2mat(para_leaf_crop3(2,2));
end
end
if isempty(cell2mat(para_leaf_crop3(3,2)))
PARAMS.CanStruc.LWfact(ii) = cell2mat(para_leaf_crop3(3,3));
else
if isstr(cell2mat(para_leaf_crop3(3,2))) == 1
PARAMS.CanStruc.LWfact(ii) = str2num(cell2mat(para_leaf_crop3(3,2)));
else
PARAMS.CanStruc.LWfact(ii) = cell2mat(para_leaf_crop3(3,2));
end
end
% CANOPY STRUCTURE
if isempty(cell2mat(para_leaf_crop3(4,2)))
PARAMS.CanStruc.leaftype(ii) = cell2mat(para_leaf_crop3(4,3)); % 1 = broad leaves, 2 = needles
else
if isstr(cell2mat(para_leaf_crop3(4,2))) == 1
PARAMS.CanStruc.leaftype(ii) = str2num(cell2mat(para_leaf_crop3(4,2)));
else
PARAMS.CanStruc.leaftype(ii) = cell2mat(para_leaf_crop3(4,2));
end
end
load './Temps/temp_variable.mat'...
'para_canopy_crop3' 'para_leaf_crop33'
if isempty(cell2mat(para_canopy_crop3(1,2)))
PARAMS.CanStruc.ld(ii) = cell2mat(para_canopy_crop3(1,3)); % leaf width or needle diameter [m]
else
PARAMS.CanStruc.ld(ii) = cell2mat(para_canopy_crop3(1,2));
end
if isempty(cell2mat(para_canopy_crop3(2,2)))
PARAMS.CanStruc.lw(ii) = cell2mat(para_canopy_crop3(2,3)); % shoot diameter for conifers
% leaf width for broadleaved vegetation (= ld)
else
PARAMS.CanStruc.lw(ii) = cell2mat(para_canopy_crop3(2,2));
end
% PARAMS WEIBULL / Dongkook: You can ignore below - Just keep here
PARAMS.CanStruc.beta(ii) = 2.1681;
PARAMS.CanStruc.alpha(ii) = 0.5831;
% Smax = maximum h2o storage capacity for foliage [mm/LAI unit]
if isempty(cell2mat(para_leaf_crop33(1,2)))
PARAMS.CanStruc.Smax = cell2mat(para_leaf_crop33(1,3));
else
PARAMS.CanStruc.Smax = cell2mat(para_leaf_crop33(1,2));
end
load './Temps/temp_variable.mat'...
'para_canopy_crop_fixed'
if isempty(cell2mat(para_canopy_crop_fixed(1,2)))
PARAMS.CanStruc.Ffact = cell2mat(para_canopy_crop_fixed(1,3)); % max fraction of canopy that can be wet
else
PARAMS.CanStruc.Ffact = cell2mat(para_canopy_crop_fixed(1,2));
end
if isempty(cell2mat(para_canopy_crop_fixed(2,2)))
PARAMS.CanStruc.pptintfact = cell2mat(para_canopy_crop_fixed(2,3)); % precip extinction coefficient
else
PARAMS.CanStruc.pptintfact = cell2mat(para_canopy_crop_fixed(2,2));
end
% PHOTOSYNTHESIS
load './Temps/temp_variable.mat'...
'fullpath_forcings' 'para_canopy_crop3' 'para_photosynthesisC3_crop3' 'para_photosynthesisC4_crop3' 'ph_type3'
load (fullpath_forcings)
PARAMS.Photosyn.ph_type(ii) = ph_type3;
if PARAMS.Photosyn.ph_type(ii) == 1
% C3 Photosynthesis Parameters
if isempty(cell2mat(para_photosynthesisC3_crop3(1,2)))
PARAMS.Photosyn.beta_ph_C3(ii) = cell2mat(para_photosynthesisC3_crop3(1,3));
else
PARAMS.Photosyn.beta_ph_C3(ii) = cell2mat(para_photosynthesisC3_crop3(1,2));
end
if isempty(cell2mat(para_photosynthesisC3_crop3(2,2)))
PARAMS.Photosyn.Vcmax25_C3{ii} = cell2mat(para_photosynthesisC3_crop3(2,3))*ones(1,size(Ta_crop,1)); % [umol / m^2 / s]