biotools.json

{
  "name": "NMRProcFlow",
  "description": "An interactive 1D NMR spectra processing tool dedicated to metabolomics. This open source software provides a complete set of tools for processing and visualization of 1D NMR data, the whole within an interactive interface based on a spectra visualization.",
  "homepage": "http://nmrprocflow.org/",
  "biotoolsID": "nmrprocflow",
  "biotoolsCURIE": "biotools:nmrprocflow",
  "version": [
    "1.4"
  ],
  "function": [
    {
      "operation": [
        {
          "uri": "http://edamontology.org/operation_3799",
          "term": "Quantification"
        },
        {
          "uri": "http://edamontology.org/operation_3214",
          "term": "Spectral analysis"
        },
        {
          "uri": "http://edamontology.org/operation_0337",
          "term": "Visualisation"
        },
        {
          "uri": "http://edamontology.org/operation_2409",
          "term": "Data handling"
        },
        {
          "uri": "http://edamontology.org/operation_2928",
          "term": "Alignment"
        }
      ],
      "input": [
        {
          "data": {
            "uri": "http://edamontology.org/data_3488",
            "term": "NMR spectrum"
          }
        }
      ],
      "output": [
        {
          "data": {
            "uri": "http://edamontology.org/data_2082",
            "term": "Matrix"
          }
        }
      ]
    }
  ],
  "toolType": [
    "Web application",
    "Desktop application"
  ],
  "topic": [
    {
      "uri": "http://edamontology.org/topic_3172",
      "term": "Metabolomics"
    }
  ],
  "operatingSystem": [
    "Linux",
    "Windows",
    "Mac"
  ],
  "language": [
    "R",
    "PHP",
    "JavaScript"
  ],
  "license": "GPL-3.0",
  "maturity": "Mature",
  "cost": "Free of charge",
  "accessibility": "Open access",
  "download": [
    {
      "url": "https://nmrprocflow.org/c_download",
      "type": "Downloads page",
      "note": "There are three ways to install NMRProcFlow, depending on the type of installation : Desktop PC, Linux Server, CLoud",
      "version": "1.4"
    },
    {
      "url": "https://github.com/INRA/NMRProcFlow",
      "type": "Source code",
      "version": "1.4"
    },
    {
      "url": "https://github.com/INRA/Rnmr1D",
      "type": "Software package",
      "note": "Rnmr1D package : Rnmr1D is the main module in the NMRProcFlow web application (http://nmrprocflow.org) concerning the NMR spectra processing.",
      "version": "1.4"
    }
  ],
  "documentation": [
    {
      "url": "https://nmrprocflow.org",
      "type": [
        "User manual"
      ]
    }
  ],
  "publication": [
    {
      "doi": "10.1007/s11306-017-1178-y",
      "type": [
        "Primary"
      ],
      "metadata": {
        "title": "NMRProcFlow: a graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics",
        "abstract": "© 2017, The Author(s).Introduction: Concerning NMR-based metabolomics, 1D spectra processing often requires an expert eye for disentangling the intertwined peaks. Objectives: The objective of NMRProcFlow is to assist the expert in this task in the best way without requirement of programming skills. Methods: NMRProcFlow was developed to be a graphical and interactive 1D NMR (1H & 13C) spectra processing tool. Results: NMRProcFlow (http://nmrprocflow.org), dedicated to metabolic fingerprinting and targeted metabolomics, covers all spectra processing steps including baseline correction, chemical shift calibration and alignment. Conclusion: Biologists and NMR spectroscopists can easily interact and develop synergies by visualizing the NMR spectra along with their corresponding experimental-factor levels, thus setting a bridge between experimental design and subsequent statistical analyses.",
        "date": "2017-04-01T00:00:00Z",
        "citationCount": 61,
        "authors": [
          {
            "name": "Jacob D."
          },
          {
            "name": "Deborde C."
          },
          {
            "name": "Lefebvre M."
          },
          {
            "name": "Maucourt M."
          },
          {
            "name": "Moing A."
          }
        ],
        "journal": "Metabolomics"
      }
    }
  ],
  "credit": [
    {
      "name": "Daniel Jacob",
      "email": "daniel.jacob@inrae.fr",
      "orcidid": "https://orcid.org/0000-0002-6687-7169",
      "typeEntity": "Person",
      "typeRole": [
        "Primary contact"
      ]
    }
  ],
  "owner": "djacob",
  "additionDate": "2017-04-13T13:56:19Z",
  "lastUpdate": "2021-07-26T10:46:19Z",
  "editPermission": {
    "type": "private"
  },
  "validated": 1,
  "homepage_status": 0,
  "elixir_badge": 0
}