ci-firedrake.yml

name: Firedrake

on:
  push:
    branches:
      - master
  pull_request:

jobs:

  test:
    runs-on: ubuntu-latest
    container:
      image: docker://firedrakeproject/firedrake-vanilla:latest

    steps:
      # This Docker file changes sets USER to firedrake instead of using the default user, so we need to update file permissions for this image to work on GH Actions.
      # See https://help.github.com/en/actions/reference/virtual-environments-for-github-hosted-runners#docker-container-filesystem
      # (copied from https://help.github.com/en/actions/migrating-to-github-actions/migrating-from-circleci-to-github-actions)
      - name: Setup file system permissions
        run: sudo chmod -R 777 $GITHUB_WORKSPACE /github /__w/_temp

      - uses: actions/checkout@v2
        with:
          fetch-depth: 1

      - name: Python info
        shell: bash -l {0}
        run: |
          source /home/firedrake/firedrake/bin/activate
          which python
          python -c "import sys; print('\n'.join(sys.path))"
          python -c "from firedrake import *"

      - name: Install dependencies
        shell: bash -l {0}
        run: |
          source /home/firedrake/firedrake/bin/activate
          python -m pip install --upgrade pip
          python -m pip install pytest
          python -m pip install pytest-cov
          python -m pip install pytest-check
          python -m pip install coveralls
          python -m pip install fdm
          python -m pip install git+https://github.com/dolfin-adjoint/pyadjoint.git@master
          python -m pip install git+https://github.com/IvanYashchuk/fecr.git@master
          python -m pip install arviz==0.10.0
          python -m pip install pymc3

      - name: Install current package
        shell: bash -l {0}
        run: |
          source /home/firedrake/firedrake/bin/activate
          python -m pip install -e .

      - name: Test with pytest
        shell: bash -l {0}
        run: |
          source /home/firedrake/firedrake/bin/activate
          python -c "import sys; print('\n'.join(sys.path))"
          export HDF5_DISABLE_VERSION_CHECK=1
          python -m pytest --cov=fenics_pymc3 --cov-config=tests/.coveragerc tests/firedrake -vvv

      - name: Send coverage
        shell: bash -l {0}
        env:
          COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}
        run: |
          source /home/firedrake/firedrake/bin/activate
          coveralls
          bash <(curl -s https://codecov.io/bash)