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integrate call crashes Julia with EXCEPTION_ACCESS_VIOLATION #99

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simonp0420 opened this issue Jan 12, 2025 · 2 comments
Closed

integrate call crashes Julia with EXCEPTION_ACCESS_VIOLATION #99

simonp0420 opened this issue Jan 12, 2025 · 2 comments

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@simonp0420
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               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.11.2 (2024-12-01)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

(@v1.11) pkg> activate --temp
  Activating new project at `C:\Users\peter\AppData\Local\Temp\jl_Sn2Hzx`

(jl_Sn2Hzx) pkg> add Dierckx
   Resolving package versions...
    Updating `C:\Users\peter\AppData\Local\Temp\jl_Sn2Hzx\Project.toml`
  [39dd38d3] + Dierckx v0.5.3
    Updating `C:\Users\peter\AppData\Local\Temp\jl_Sn2Hzx\Manifest.toml`
  [39dd38d3] + Dierckx v0.5.3
  [692b3bcd] + JLLWrappers v1.7.0
  [21216c6a] + Preferences v1.4.3
  [cd4c43a9] + Dierckx_jll v0.1.1+0
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8f399da3] + Libdl v1.11.0
  [de0858da] + Printf v1.11.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0

julia> using Dierckx

julia> x = 0:0.01:π
0.0:0.01:3.14

julia> y = sin.(x)
315-element Vector{Float64}:
 0.0
 0.009999833334166664
 0.01999866669333308
 0.02999550020249566
 0.03998933418663416
 0.04997916927067833
 0.059964006479444595
 0.06994284733753277
 0.0799146939691727
 0.08987854919801104
 0.09983341664682815
 0.10977830083717481
 0.11971220728891936
 ⋮
 0.11136118868664958
 0.10141798631660187
 0.09146464223243675
 0.08150215176026912
 0.07153151114084326
 0.06155371742991315
 0.05156976839853464
 0.04158066243329049
 0.031587398436453896
 0.02159097572609596
 0.011592393936158275
 0.0015926529164868282

julia> spl = Spline1D(x,y)
Spline1D(knots=[0.0,0.02 … 3.12,3.14] (313 elements), k=3, extrapolation="nearest", residual=0.0)

julia> t = integrate(spl, first(x), last(x))

Please submit a bug report with steps to reproduce this fault, and any error messages that follow (in their entirety). Thanks.
Exception: EXCEPTION_ACCESS_VIOLATION at 0x7ffe6097d2a0 -- type_object_id_ at C:/workdir/src\builtins.c:337
in expression starting at none:0
type_object_id_ at C:/workdir/src\builtins.c:337
type_object_id_ at C:/workdir/src\builtins.c:372
type_object_id_ at C:/workdir/src\builtins.c:361
ijl_object_id_ at C:/workdir/src\builtins.c:481 [inlined]
ijl_object_id at C:/workdir/src\builtins.c:487 [inlined]
hash_svec at C:/workdir/src\builtins.c:320
jl_object_id__cold at C:/workdir/src\builtins.c:454
ijl_object_id_ at C:/workdir/src\builtins.c:481 [inlined]
ijl_object_id at C:/workdir/src\builtins.c:487 [inlined]
hash_svec at C:/workdir/src\builtins.c:320
jl_object_id__cold at C:/workdir/src\builtins.c:454
ijl_object_id_ at C:/workdir/src\builtins.c:481 [inlined]
jl_table_peek_bp at C:/workdir/src\iddict.c:118 [inlined]
ijl_eqtable_get at C:/workdir/src\iddict.c:157
lookup_leafcache at C:/workdir/src\gf.c:1250 [inlined]
jl_lookup_generic_ at C:/workdir/src\gf.c:3066
ijl_apply_generic at C:/workdir/src\gf.c:3121
with_repl_linfo at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:660
jfptr_with_repl_linfo_10436.1 at C:\Users\peter\.julia\juliaup\julia-1.11.2+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_hz07T.dll (unknown line)
print_response at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:376
do_respond at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:1003
jfptr_do_respond_10499.1 at C:\Users\peter\.julia\juliaup\julia-1.11.2+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_hz07T.dll (unknown line)
jl_apply at C:/workdir/src\julia.h:2157 [inlined]
jl_f__call_latest at C:/workdir/src\builtins.c:875
#invokelatest#2 at .\essentials.jl:1055 [inlined]
invokelatest at .\essentials.jl:1052 [inlined]
run_interface at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\LineEdit.jl:2755
jfptr_run_interface_8959.1 at C:\Users\peter\.julia\juliaup\julia-1.11.2+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_hz07T.dll (unknown line)
run_frontend at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:1474
#75 at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:480
jfptr_YY.75_10401.1 at C:\Users\peter\.julia\juliaup\julia-1.11.2+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_hz07T.dll (unknown line)
jl_apply at C:/workdir/src\julia.h:2157 [inlined]
start_task at C:/workdir/src\task.c:1202
Allocations: 8329653 (Pool: 8327965; Big: 1688); GC: 9

Please submit a bug report with steps to reproduce this fault, and any error messages that follow (in their entirety). Thanks.
Exception: EXCEPTION_ACCESS_VIOLATION at 0x7ffe60965875 -- jl_array_ptr_ref at C:/workdir/src\julia.h:1243 [inlined]
ml_matches at C:/workdir/src\gf.c:3750
in expression starting at none:0
jl_array_ptr_ref at C:/workdir/src\julia.h:1243 [inlined]
ml_matches at C:/workdir/src\gf.c:3750
ml_matches at C:/workdir/src\gf.c:3153 [inlined]
_gf_invoke_lookup at C:/workdir/src\gf.c:3139 [inlined]
ijl_gf_invoke_lookup at C:/workdir/src\gf.c:3151
_hasmethod at .\boot.jl:964
jfptr__hasmethod_30005.1 at C:\Users\peter\.julia\juliaup\julia-1.11.2+0.x64.w64.mingw32\lib\julia\sys.dll (unknown line)
_hasmethod at .\Base.jl:193
jfptr__hasmethod_46150.1 at C:\Users\peter\.julia\juliaup\julia-1.11.2+0.x64.w64.mingw32\lib\julia\sys.dll (unknown line)
hasmethod at .\reflection.jl:2347
_atexit at .\initdefs.jl:456
jfptr__atexit_71193.1 at C:\Users\peter\.julia\juliaup\julia-1.11.2+0.x64.w64.mingw32\lib\julia\sys.dll (unknown line)
jl_apply at C:/workdir/src\julia.h:2157 [inlined]
ijl_atexit_hook at C:/workdir/src\init.c:271
ijl_exit at C:/workdir/src\init.c:207
jl_exception_handler at C:/workdir/src\signals-win.c:337 [inlined]
jl_exception_handler at C:/workdir/src\signals-win.c:229
__julia_personality at C:/workdir/src\win32_ucontext.c:28
_chkstk at C:\Windows\SYSTEM32\ntdll.dll (unknown line)
RtlFindCharInUnicodeString at C:\Windows\SYSTEM32\ntdll.dll (unknown line)
KiUserExceptionDispatcher at C:\Windows\SYSTEM32\ntdll.dll (unknown line)
type_object_id_ at C:/workdir/src\builtins.c:335
type_object_id_ at C:/workdir/src\builtins.c:372
type_object_id_ at C:/workdir/src\builtins.c:361
ijl_object_id_ at C:/workdir/src\builtins.c:481 [inlined]
ijl_object_id at C:/workdir/src\builtins.c:487 [inlined]
hash_svec at C:/workdir/src\builtins.c:320
jl_object_id__cold at C:/workdir/src\builtins.c:454
ijl_object_id_ at C:/workdir/src\builtins.c:481 [inlined]
ijl_object_id at C:/workdir/src\builtins.c:487 [inlined]
hash_svec at C:/workdir/src\builtins.c:320
jl_object_id__cold at C:/workdir/src\builtins.c:454
ijl_object_id_ at C:/workdir/src\builtins.c:481 [inlined]
jl_table_peek_bp at C:/workdir/src\iddict.c:118 [inlined]
ijl_eqtable_get at C:/workdir/src\iddict.c:157
lookup_leafcache at C:/workdir/src\gf.c:1250 [inlined]
jl_lookup_generic_ at C:/workdir/src\gf.c:3066
ijl_apply_generic at C:/workdir/src\gf.c:3121
with_repl_linfo at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:660
jfptr_with_repl_linfo_10436.1 at C:\Users\peter\.julia\juliaup\julia-1.11.2+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_hz07T.dll (unknown line)
print_response at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:376
do_respond at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:1003
jfptr_do_respond_10499.1 at C:\Users\peter\.julia\juliaup\julia-1.11.2+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_hz07T.dll (unknown line)
jl_apply at C:/workdir/src\julia.h:2157 [inlined]
jl_f__call_latest at C:/workdir/src\builtins.c:875
#invokelatest#2 at .\essentials.jl:1055 [inlined]
invokelatest at .\essentials.jl:1052 [inlined]
run_interface at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\LineEdit.jl:2755
jfptr_run_interface_8959.1 at C:\Users\peter\.julia\juliaup\julia-1.11.2+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_hz07T.dll (unknown line)
run_frontend at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:1474
#75 at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:480
jfptr_YY.75_10401.1 at C:\Users\peter\.julia\juliaup\julia-1.11.2+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_hz07T.dll (unknown line)
jl_apply at C:/workdir/src\julia.h:2157 [inlined]
start_task at C:/workdir/src\task.c:1202
Allocations: 8329653 (Pool: 8327965; Big: 1688); GC: 9
@bclyons12
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This breaks for me as well, though it gives a segmentation fault. It appears to be the latest version of Dierckx_jll. Downgrading Dierckx_jll v0.1.1+0 ⇒ v0.1.0+0 fixes the problem.

I first saw this when compiling a sysimage of a bigger code with PackageCompiler. Here was that error, seemingly an unknown function ip?

[2233340] signal 11 (1): Segmentation fault
in expression starting at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/docs/src/tutorial.jl:41
unknown function (ip: 0x152cfb985291)
fpintb_ at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/artifacts/84929b756ffb0c74c96cd2779caa935fa733436c/lib/libddierckx.so (unknown line)
splint_ at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/artifacts/84929b756ffb0c74c96cd2779caa935fa733436c/lib/libddierckx.so (unknown line)
_integrate at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/Dierckx/TDOyl/src/Dierckx.jl:355
integrate at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/Dierckx/TDOyl/src/Dierckx.jl:364 [inlined]
MXH_moment_spline at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/MillerExtendedHarmonic/oQve9/src/MXH.jl:225
#MXH_coeffs_spline!#15 at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/MillerExtendedHarmonic/oQve9/src/MXH.jl:584
MXH_coeffs_spline! at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/MillerExtendedHarmonic/oQve9/src/MXH.jl:577 [inlined]
MXH! at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/MillerExtendedHarmonic/oQve9/src/MXH.jl:627
MXH! at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/MillerExtendedHarmonic/oQve9/src/MXH.jl:606
unknown function (ip: 0x152c46368d52)
#MXH!#7 at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/MillerExtendedHarmonic/oQve9/src/MXH.jl:397
MXH! at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/MillerExtendedHarmonic/oQve9/src/MXH.jl:364 [inlined]
#MXH#6 at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/MillerExtendedHarmonic/oQve9/src/MXH.jl:343
MXH at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/MillerExtendedHarmonic/oQve9/src/MXH.jl:325 [inlined]
_step at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/actors/equilibrium/tequila_actor.jl:108
macro expansion at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/actors.jl:114 [inlined]
macro expansion at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/TimerOutputs/6KVfH/src/TimerOutput.jl:237 [inlined]
#step#763 at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/actors.jl:109
step at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/actors.jl:102 [inlined]
_step at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/actors/equilibrium/equilibrium_actor.jl:78
macro expansion at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/actors.jl:114 [inlined]
macro expansion at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/TimerOutputs/6KVfH/src/TimerOutput.jl:237 [inlined]
#step#763 at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/actors.jl:109
step at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/actors.jl:102 [inlined]
#ActorEquilibrium#808 at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/actors/equilibrium/equilibrium_actor.jl:33 [inlined]
ActorEquilibrium at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/actors/equilibrium/equilibrium_actor.jl:31 [inlined]
macro expansion at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/ddinit/init_equilibrium.jl:61 [inlined]
macro expansion at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/TimerOutputs/6KVfH/src/TimerOutput.jl:237 [inlined]
init_equilibrium! at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/ddinit/init_equilibrium.jl:11
macro expansion at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/ddinit/init.jl:96 [inlined]
macro expansion at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/TimerOutputs/6KVfH/src/TimerOutput.jl:237 [inlined]
#init#696 at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/ddinit/init.jl:31
init at /fusion/projects/codes/julia/fuse/environments/v0.4.0/.julia/packages/FUSE/h8yxF/src/ddinit/init.jl:20
jl_apply at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/julia.h:2157 [inlined]
do_call at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/interpreter.c:126
eval_value at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/interpreter.c:223
eval_stmt_value at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/interpreter.c:174 [inlined]
eval_body at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/interpreter.c:663
jl_interpret_toplevel_thunk at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/interpreter.c:821
jl_toplevel_eval_flex at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/toplevel.c:943
jl_toplevel_eval_flex at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/toplevel.c:886
jl_toplevel_eval_flex at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/toplevel.c:886
ijl_toplevel_eval_in at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/toplevel.c:994
eval at ./boot.jl:430 [inlined]
include_string at ./loading.jl:2734
_include at ./loading.jl:2794
include at ./sysimg.jl:38
unknown function (ip: 0x152cd12ddb02)
jl_apply at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/julia.h:2157 [inlined]
do_call at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/interpreter.c:126
eval_value at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/interpreter.c:223
eval_stmt_value at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/interpreter.c:174 [inlined]
eval_body at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/interpreter.c:663
jl_interpret_toplevel_thunk at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/interpreter.c:821
jl_toplevel_eval_flex at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/toplevel.c:943
jl_toplevel_eval_flex at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/toplevel.c:886
ijl_toplevel_eval_in at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/toplevel.c:994
eval at ./boot.jl:430 [inlined]
eval_user_input at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:245
repl_backend_loop at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:342
#start_repl_backend#59 at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:327
start_repl_backend at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:324
#run_repl#72 at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:483
run_repl at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:469
jfptr_run_repl_10104.1 at /fusion/projects/codes/julia/julia-1.11.2/share/julia/compiled/v1.11/REPL/u0gqU_4x0TT.so (unknown line)
#1150 at ./client.jl:446
jfptr_YY.1150_14803.1 at /fusion/projects/codes/julia/julia-1.11.2/share/julia/compiled/v1.11/REPL/u0gqU_4x0TT.so (unknown line)
jl_apply at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/julia.h:2157 [inlined]
jl_f__call_latest at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/builtins.c:875
#invokelatest#2 at ./essentials.jl:1055 [inlined]
invokelatest at ./essentials.jl:1052 [inlined]
run_main_repl at ./client.jl:430
repl_main at ./client.jl:567 [inlined]
_start at ./client.jl:541
jfptr__start_73406.1 at /fusion/projects/codes/julia/julia-1.11.2/lib/julia/sys.so (unknown line)
jl_apply at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/julia.h:2157 [inlined]
true_main at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/jlapi.c:900
jl_repl_entrypoint at /cache/build/tester-amdci5-12/julialang/julia-release-1-dot-11/src/jlapi.c:1059
main at julia (unknown line)
__libc_start_main at /lib64/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8)
Allocations: 605606793 (Pool: 605597971; Big: 8822); GC: 137
Segmentation fault

bclyons12 referenced this issue in ProjectTorreyPines/MillerExtendedHarmonic.jl Jan 14, 2025
giordano added a commit to giordano/Yggdrasil that referenced this issue Jan 14, 2025
People have reported issues with the new
version (JuliaMath/Dierckx.jl#98,
JuliaMath/Dierckx.jl#99) but no one tried to debug it.
At least this should give users a more usable version for some time.
@giordano giordano closed this as not planned Won't fix, can't repro, duplicate, stale Jan 14, 2025
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Duplicate of #98

@giordano giordano marked this as a duplicate of #98 Jan 14, 2025
giordano added a commit to giordano/Yggdrasil that referenced this issue Jan 14, 2025
People have reported issues with the new
version (JuliaMath/Dierckx.jl#98,
JuliaMath/Dierckx.jl#99) but no one tried to debug it.
At least this should give users a more usable version for some time.
giordano added a commit to JuliaPackaging/Yggdrasil that referenced this issue Jan 14, 2025
People have reported issues with the new
version (JuliaMath/Dierckx.jl#98,
JuliaMath/Dierckx.jl#99) but no one tried to debug it.
At least this should give users a more usable version for some time.
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