Figure1_plots
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### Plotting Figure 1 a. Simulating coordinates of labels on the map simulate_point_locations.R requirements: samples_locations.txt b. Plotting a map with strains map_geo.R requirements: samples_locations.txt simulated_coords.txt world_intermediate.txt c. Plotting picture of a globe plotGlobe.R d. Plotting NJ phylogeny plotTree.py requirements: NewickExport_fasttree.nwk Species_distinction_PCA.txt e. Plotting structure plotStructure.R requirements: Structure_genomewide_results_K2.csv Structure_genomewide_results_novoulmi_K2.csv Structure_genomewide_results_novoulmi_K3.csv Species_distinction_PCA.txt plotTree_strain_order.txt f. Plotting PCA PCA_Plot.R requirements: Species_distinction_PCA.txt scores_pca.txt