start.m

function varargout = start(varargin)
% START MATLAB code for start.fig
%      START, by itself, creates a new START or raises the existing
%      singleton*.
%
%      H = START returns the handle to a new START or the handle to
%      the existing singleton*.
%
%      START('CALLBACK',hObject,eventData,handles,...) calls the local
%      function named CALLBACK in START.M with the given input arguments.
%
%      START('Property','Value',...) creates a new START or raises the
%      existing singleton*.  Starting from the left, property value pairs are
%      applied to the GUI before start_OpeningFcn gets called.  An
%      unrecognized property name or invalid value makes property application
%      stop.  All inputs are passed to start_OpeningFcn via varargin.
%
%      *See GUI Options on GUIDE's Tools menu.  Choose "GUI allows only one
%      instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES

% Edit the above text to modify the response to help start

% Last Modified by GUIDE v2.5 10-Mar-2017 21:26:23

% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name',       mfilename, ...
    'gui_Singleton',  gui_Singleton, ...
    'gui_OpeningFcn', @start_OpeningFcn, ...
    'gui_OutputFcn',  @start_OutputFcn, ...
    'gui_LayoutFcn',  [] , ...
    'gui_Callback',   []);
if nargin && ischar(varargin{1})
    gui_State.gui_Callback = str2func(varargin{1});
end

if nargout
    [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
    gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT


% --- Executes just before start is made visible.
function start_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject    handle to figure
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
% varargin   command line arguments to start (see VARARGIN)

% Choose default command line output for start
handles.output = hObject;
maximumNrOfStructures = 50;
handles.selected_structures = zeros(maximumNrOfStructures,1);
handles.defaultdatapath = fullfile('.');
handles.slice = -1;

% add to path
addpath(fullfile('dicom_import'),...
    fullfile('feature_extraction'),...
    fullfile('utils'),...    
    fullfile('visualization'));

% Update handles structure
guidata(hObject, handles);

% UIWAIT makes start wait for user response (see UIRESUME)
% uiwait(handles.figure1);


% --- Outputs from this function are returned to the command line.
function varargout = start_OutputFcn(hObject, eventdata, handles)
% varargout  cell array for returning output args (see VARARGOUT);
% hObject    handle to figure
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Get default command line output from handles structure
varargout{1} = handles.output;


% --- Executes on button press in checkbox1.
function checkbox1_Callback(hObject, eventdata, handles)
% hObject    handle to checkbox1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of checkbox1


% --- Executes on button press in checkbox2.
function checkbox2_Callback(hObject, eventdata, handles)
% hObject    handle to checkbox2 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of checkbox2


% --- Executes on button press in Up_button.
function Up_button_Callback(hObject, eventdata, handles)

% show the hourglass during computation
oldpointer = get(handles.figure1, 'pointer');
set(handles.figure1, 'pointer', 'watch')
drawnow;

handles.slice = handles.slice + 1;
% Update handles structure
guidata(hObject, handles)
handles.slice = plotDoseAndCT( hObject, eventdata, handles);
% Update handles structure
guidata(hObject, handles)

% set back an arrow
set(handles.figure1, 'pointer', oldpointer)


% --- Executes on button press in Down_button.
function Down_button_Callback(hObject, eventdata, handles)

% show the hourglass during computation
oldpointer = get(handles.figure1, 'pointer');
set(handles.figure1, 'pointer', 'watch')
drawnow;

handles.slice = handles.slice - 1;
% Update handles structure
guidata(hObject, handles)
handles.slice = plotDoseAndCT( hObject, eventdata, handles );
% Update handles structure
guidata(hObject, handles)

% set back an arrow
set(handles.figure1, 'pointer', oldpointer)


% % --- Executes on button press in Plot_button.
% function Plot_button_Callback(hObject, eventdata, handles)
% 
% % show the hourglass during computation
% oldpointer = get(handles.figure1, 'pointer');
% set(handles.figure1, 'pointer', 'watch')
% drawnow;
% 
% % Update handles structure
% guidata(hObject, handles)
% axes(handles.axes1);
% handles.slice = plotDoseAndCT( hObject, eventdata, handles );
% guidata(hObject, handles)
% 
% % set back an arrow
% set(handles.figure1, 'pointer', oldpointer)


% --- Executes on button press in LoadTPSdata_button.
function LoadTPSdata_button_Callback(hObject, eventdata, handles)

% show the hourglass during computation
oldpointer = get(handles.figure1, 'pointer');
set(handles.figure1, 'pointer', 'watch')
drawnow;

[filename, directory] = uigetfile([handles.defaultdatapath 'mat'],...
    'Choose tps_data.mat file...');
if ischar(filename) && ischar(directory)
    load(fullfile(directory, filename));
    %load([directory '\' filename]);
    handles.output_directory = directory;
    handles.s_fieldnames = fieldnames(tps_data.structures);
    setPatName(handles);
    handles.tps_data = tps_data;
    guidata(hObject, handles);
    enablecheckboxes(hObject, eventdata, handles)
    handles.slice = plotDoseAndCT( hObject, eventdata, handles );
end

% set back an arrow
set(handles.figure1, 'pointer', oldpointer)

function setPatName(handles)
[~, deepestFolder] = fileparts(handles.output_directory(1:end-1));
set(handles.patname_text, 'String', deepestFolder);

% --- Executes on button press in structure32_checkbox.
function checkbox53_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(51, hObject, eventdata, handles);

function enablecheckboxes(hObject, eventdata, handles)
% set checkbox names
for loopIndex = 1:numel(handles.s_fieldnames)
    set(eval(['handles.structure' num2str(loopIndex) '_checkbox']), 'String', handles.s_fieldnames{loopIndex})
    set(eval(['handles.structure' num2str(loopIndex) '_checkbox']), 'Visible', 'on')
end


function checkboxmanager( number, hObject, eventdata, handles)
if get(hObject,'Value') == 1
    handles.selected_structures(number) = 1;
    r = randi([0 1]);
    g = randi([0 1]);
    b = randi([0 1]);
    set(hObject, 'ForegroundColor', [r g b]);
    if (r*g*b == 1 || (r == 1 && g == 1 && b == 0) || (r == 0 && g == 1 && b == 0) || (r == 0 && g == 1 && b == 1))
        set(hObject, 'BackgroundColor', [0 0 0]);
    end
else
    handles.selected_structures(number) = 0;
    set(hObject, 'ForegroundColor', [0 0 0]);
    set(hObject, 'BackgroundColor', [1 1 1]);
end
% Update handles structure
guidata(hObject, handles)


% --- Executes on selection change in listbox1.
function listbox1_Callback(hObject, eventdata, handles)
% hObject    handle to listbox1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: contents = cellstr(get(hObject,'String')) returns listbox1 contents as cell array
%        contents{get(hObject,'Value')} returns selected item from listbox1


% --- Executes during object creation, after setting all properties.
function listbox1_CreateFcn(hObject, eventdata, handles)
% hObject    handle to listbox1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: listbox controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end


function slice = plotDoseAndCT(hObject, eventdata, handles)
struct_sel = lookForEnabledCheckboxes2(hObject, eventdata, handles);
if sum(struct_sel) == 0
    colors = [0 0 0];
else
    colors = getCheckboxColors(hObject, eventdata, handles);
end
% if handles.slice ~= -1
%     shift = (handles.tps_data.ct.zVec(handles.slice)-handles.tps_data.dose.zVec(handles.slice))/(handles.tps_data.ct.zVec(1)-handles.tps_data.ct.zVec(2)); % I NEED MORE ELEGANT SOLUTION!!!
% else
%     shift = 0;
% end
% plot ct
if isfield(handles.tps_data, 'ct')
    slice = plot_ct(handles.tps_data, handles.s_fieldnames(struct_sel == 1), handles.slice, colors, handles.axes1);
    handles.slice = slice;
end
% plot dose
if isfield(handles.tps_data, 'dose')
    slice = plot_dose(handles.tps_data, handles.s_fieldnames(struct_sel == 1), handles.slice, colors, handles.axes2);
    handles.slice = slice;
end
% plot 3rd axes
if isfield(handles.tps_data, 'dose')
        cla(handles.axes3) % clear axes before plotting
        %drawnow
        contents = get(handles.visualization_popupmenu, 'Value');
        switch contents
            case 1
                struct_sel = find(struct_sel == 1);
                for j=1:length(struct_sel)
                    linecolor = get(eval(['handles.structure' ...
                        num2str(struct_sel(j)) '_checkbox']), 'ForegroundColor');
                    %title = handles.s_fieldnames{struct_sel(j)};
                    % dvh = calc_dvh(handles.tps_data.dose.cube.*handles.tps_data.structures.(handles.s_fieldnames{struct_sel(j)}).indicator_mask);
                    hold( handles.axes3, 'on');
                    struct_cube = handles.tps_data.dose.cube.*handles.tps_data.structures.(handles.s_fieldnames{struct_sel(j)}).indicator_mask;
                    plot_dvh(struct_cube, linecolor, '', handles.axes3);
                end
                hold( handles.axes3, 'off');
            case 2
                plot_structure_dose(handles.tps_data, handles.s_fieldnames(struct_sel == 1), handles.slice, colors, handles.axes3);
            case 3
                plot_structure_gradient(handles.tps_data, handles.s_fieldnames(struct_sel == 1), handles.slice, colors, handles.axes3);
        end
end
guidata(hObject, handles)



function setTestResult(handles,flag)
if flag
    set(handles.analysisresult_text,'String', 'Test passed!');
    set(handles.analysisresult_text,'ForegroundColor', [0 0.5 0]);
else
    set(handles.analysisresult_text,'String', 'Test failed!');
    set(handles.analysisresult_text,'ForegroundColor', [1 0 0]);
end

function index = lookForEnabledCheckboxes(hObject, eventdata, handles)
% set checkbox names
for loopIndex = 1:numel(handles.s_fieldnames)
    value = get(eval(['handles.structure' num2str(loopIndex) '_checkbox']), 'Value');
    if value
        index = loopIndex;
    end
end

function index = lookForEnabledCheckboxes2(hObject, eventdata, handles)
% set checkbox names
index = zeros(numel(handles.s_fieldnames),1);
for loopIndex = 1:numel(handles.s_fieldnames)
    value = get(eval(['handles.structure' num2str(loopIndex) '_checkbox']), 'Value');
    if value
        index(loopIndex) = 1;
    end
end

function colors = getCheckboxColors(hObject, eventdata, handles)
% set checkbox names
%colors = zeros(numel(handles.s_fieldnames)-1,3);
index = 1;
for loopIndex = 1:numel(handles.s_fieldnames)
    value = get(eval(['handles.structure' num2str(loopIndex) '_checkbox']), 'Value');
    if value
        colors(index,:) = get(eval(['handles.structure' num2str(loopIndex) '_checkbox']), 'ForegroundColor');
        index = index+1;
    end
end

function clearCheckboxes(hObject, eventdata, handles)
% set checkbox names
for loopIndex = 1:numel(handles.s_fieldnames)
    set(eval(['handles.structure' num2str(loopIndex) '_checkbox']), 'Value', 0);
    set(eval(['handles.structure' num2str(loopIndex) '_checkbox']), 'ForegroundColor', [0 0 0]);
    set(eval(['handles.structure' num2str(loopIndex) '_checkbox']), 'BackgroundColor', [1 1 1]);
end
handles.selected_structures = handles.selected_structures * 0;
guidata(hObject, handles);

% --- Executes on button press in next_button.
function next_button_Callback(hObject, eventdata, handles)
% hObject    handle to next_button (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
guidata(hObject, handles);
uiresume(gcbf);


% --- Executes on selection change in visualization_popupmenu.
function visualization_popupmenu_Callback(hObject, eventdata, handles)
% hObject    handle to visualization_popupmenu (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: contents = cellstr(get(hObject,'String')) returns visualization_popupmenu contents as cell array
%        contents{get(hObject,'Value')} returns selected item from visualization_popupmenu


% --- Executes during object creation, after setting all properties.
function visualization_popupmenu_CreateFcn(hObject, eventdata, handles)
% hObject    handle to visualization_popupmenu (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: popupmenu controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end


% --- Executes when selected object is changed in uipanel3.
function uipanel3_SelectionChangeFcn(hObject, eventdata, handles)
% hObject    handle to the selected object in uipanel3
% eventdata  structure with the following fields (see UIBUTTONGROUP)
%	EventName: string 'SelectionChanged' (read only)
%	OldValue: handle of the previously selected object or empty if none was selected
%	NewValue: handle of the currently selected object
% handles    structure with handles and user data (see GUIDATA)
%disp(get(get(handles.uipanel3,'SelectedObject'),'String'));



% --- Executes on button press in reset_button.
function reset_button_Callback(hObject, eventdata, handles)
% hObject    handle to reset_button (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
OrigDlgH = ancestor(hObject, 'figure');
delete(OrigDlgH);
start();


% --- Executes on button press in calcFeatures.
function calcFeatures_Callback(hObject, eventdata, handles)
organ = handles.organ.String(handles.organ.Value, :);
if get(handles.batch_tick, 'Value') == 0
    % show the hourglass during computation
    oldpointer = get(handles.figure1, 'pointer');
    set(handles.figure1, 'pointer', 'watch')
    drawnow;
    
    if isfield(handles, 'tps_data')
        features = calc_features(handles.tps_data, organ);
        features_table = cell2table(features(2:end, :));
        features_table.Properties.VariableNames = features(1, :);
        writetable(features_table, fullfile(handles.output_directory, 'features.csv'));
    else
        errordlg('Load tps.mat file first!','tps.mat error');
    end
    
    set(handles.figure1, 'pointer', oldpointer);
    drawnow;
else
    h = warndlg('DicomToolboxMatlab will load features from the csv files if found in patients'' directories. If you want to calculate all features from scratch, delete the csv files first!');
    uiwait(h);
    input_dir = uigetdir(handles.defaultdatapath, 'Choose Input Directory...');
    showGUI = true;
    recalcFeatures = false;
    calc_features_batch( input_dir, organ, recalcFeatures, showGUI);
end



% --- Executes on button press in select_all_button.
function select_all_button_Callback(hObject, eventdata, handles)
% hObject    handle to select_all_button (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)


% --- Executes on button press in select_none_button.
function select_none_button_Callback(hObject, eventdata, handles)
% hObject    handle to select_none_button (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)


% --- Executes on button press in newloader_button.
function newloader_button_Callback(hObject, eventdata, handles)
% hObject    handle to newloader_button (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
if get(handles.batch_tick, 'Value') == 0
    dicom_import_gui
else
    dicom_import_batch_gui
end


% --- Executes on button press in batch_tick.
function batch_tick_Callback(hObject, eventdata, handles)
% hObject    handle to batch_tick (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of batch_tick

% --- Executes on button press in structure1_checkbox.
function structure1_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure1_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure1_checkbox
checkboxmanager(1, hObject, eventdata, handles);


% --- Executes on button press in structure2_checkbox.
function structure2_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure2_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure2_checkbox
checkboxmanager(2, hObject, eventdata, handles);

% --- Executes on button press in structure3_checkbox.
function structure3_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure3_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure3_checkbox
checkboxmanager(3, hObject, eventdata, handles);


% --- Executes on button press in structure4_checkbox.
function structure4_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure4_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure4_checkbox
checkboxmanager(4, hObject, eventdata, handles);


% --- Executes on button press in structure5_checkbox.
function structure5_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure5_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure5_checkbox
checkboxmanager(5, hObject, eventdata, handles);


% --- Executes on button press in structure6_checkbox.
function structure6_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure6_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure6_checkbox
checkboxmanager(6, hObject, eventdata, handles);


% --- Executes on button press in structure7_checkbox.
function structure7_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure7_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure7_checkbox
checkboxmanager(7, hObject, eventdata, handles);


% --- Executes on button press in structure8_checkbox.
function structure8_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure8_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure8_checkbox
checkboxmanager(8, hObject, eventdata, handles);


% --- Executes on button press in structure9_checkbox.
function structure9_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure9_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure9_checkbox
checkboxmanager(9, hObject, eventdata, handles);


% --- Executes on button press in structure10_checkbox.
function structure10_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure10_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure10_checkbox
checkboxmanager(10, hObject, eventdata, handles);


% --- Executes on button press in structure11_checkbox.
function structure11_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure11_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure11_checkbox
checkboxmanager(11, hObject, eventdata, handles);


% --- Executes on button press in structure12_checkbox.
function structure12_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure12_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure12_checkbox
checkboxmanager(12, hObject, eventdata, handles);


% --- Executes on button press in structure13_checkbox.
function structure13_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure13_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure13_checkbox
checkboxmanager(13, hObject, eventdata, handles);


% --- Executes on button press in structure14_checkbox.
function structure14_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure14_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure14_checkbox
checkboxmanager(14, hObject, eventdata, handles);


% --- Executes on button press in structure15_checkbox.
function structure15_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure15_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure15_checkbox
checkboxmanager(15, hObject, eventdata, handles);


% --- Executes on button press in structure16_checkbox.
function structure16_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure16_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure16_checkbox
checkboxmanager(16, hObject, eventdata, handles);


% --- Executes on button press in structure17_checkbox.
function structure17_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure17_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure17_checkbox
checkboxmanager(17, hObject, eventdata, handles);


% --- Executes on button press in structure18_checkbox.
function structure18_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure18_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure18_checkbox
checkboxmanager(18, hObject, eventdata, handles);


% --- Executes on button press in structure19_checkbox.
function structure19_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure19_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure19_checkbox
checkboxmanager(19, hObject, eventdata, handles);


% --- Executes on button press in structure20_checkbox.
function structure20_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure20_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure20_checkbox
checkboxmanager(20, hObject, eventdata, handles);


% --- Executes on button press in structure21_checkbox.
function structure21_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure21_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure21_checkbox
checkboxmanager(21, hObject, eventdata, handles);


% --- Executes on button press in structure22_checkbox.
function structure22_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure22_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure22_checkbox
checkboxmanager(22, hObject, eventdata, handles);


% --- Executes on button press in structure23_checkbox.
function structure23_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure23_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure23_checkbox
checkboxmanager(23, hObject, eventdata, handles);


% --- Executes on button press in structure24_checkbox.
function structure24_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure24_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure24_checkbox
checkboxmanager(24, hObject, eventdata, handles);


% --- Executes on button press in structure25_checkbox.
function structure25_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure25_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure25_checkbox
checkboxmanager(25, hObject, eventdata, handles);


% --- Executes on button press in structure26_checkbox.
function structure26_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure26_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure26_checkbox
checkboxmanager(26, hObject, eventdata, handles);


% --- Executes on button press in structure27_checkbox.
function structure27_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure27_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure27_checkbox
checkboxmanager(27, hObject, eventdata, handles);


% --- Executes on button press in structure28_checkbox.
function structure28_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure28_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure28_checkbox
checkboxmanager(28, hObject, eventdata, handles);


% --- Executes on button press in structure29_checkbox.
function structure29_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure29_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure29_checkbox
checkboxmanager(29, hObject, eventdata, handles);


% --- Executes on button press in structure30_checkbox.
function structure30_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure30_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure30_checkbox
checkboxmanager(30, hObject, eventdata, handles);


% --- Executes on button press in structure31_checkbox.
function structure31_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure31_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure31_checkbox
checkboxmanager(31, hObject, eventdata, handles);


% --- Executes on button press in structure32_checkbox.
function structure32_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(32, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure33_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(33, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure34_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(34, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure35_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(35, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure36_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(36, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure37_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(37, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure38_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(38, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure39_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(39, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure40_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(40, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure41_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(41, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure42_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(42, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure43_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(43, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure44_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(44, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure45_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(45, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure46_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(46, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure47_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(47, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure48_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(48, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure49_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(49, hObject, eventdata, handles);

% --- Executes on button press in structure32_checkbox.
function structure50_checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to structure32_checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of structure32_checkbox
checkboxmanager(50, hObject, eventdata, handles);



% --- Executes on selection change in organ.
function organ_Callback(hObject, eventdata, handles)
% hObject    handle to organ (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: contents = cellstr(get(hObject,'String')) returns organ contents as cell array
%        contents{get(hObject,'Value')} returns selected item from organ


% --- Executes during object creation, after setting all properties.
function organ_CreateFcn(hObject, eventdata, handles)
% hObject    handle to organ (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: popupmenu controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end