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main.yml
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name: Py 3.8, 3.9, 3.10, 3.11 | Windows Mac Linux
on:
push:
branches:
- master
- develop
pull_request:
branches:
- master
- develop
jobs:
set-os:
runs-on: ubuntu-latest
outputs:
matrix_os: ${{ steps.set-matrix.outputs.matrix_os }}
steps:
- id: set-matrix
run: |
if [[ "${{ github.base_ref }}" == "develop" ]]; then
echo "matrix_os=[\"ubuntu-latest\"]" >> $GITHUB_OUTPUT
else
echo "matrix_os=[\"windows-latest\", \"ubuntu-latest\", \"macos-latest\"]" >> $GITHUB_OUTPUT
fi
check-changes:
runs-on: ubuntu-latest
outputs:
wave_io_hindcast_changed: ${{ steps.changes.outputs.wave_io_hindcast }}
should-run-hindcast: ${{ steps.hindcast-logic.outputs.should-run-hindcast }}
steps:
- name: Checkout code
uses: actions/checkout@v3
- name: Check for changes in wave/io/hindcast
id: changes
uses: dorny/paths-filter@v2
with:
filters: |
wave_io_hindcast:
- 'mhkit/tests/wave/io/hindcast/**'
- id: hindcast-logic
run: |
if [[ "${{ github.event.pull_request.base.ref }}" == "master" || "${{ steps.changes.outputs.wave_io_hindcast }}" == "true" ]]; then
echo "should-run-hindcast=true" >> "$GITHUB_OUTPUT"
else
echo "should-run-hindcast=false" >> "$GITHUB_OUTPUT"
fi
prepare-cache:
needs: [check-changes]
runs-on: ubuntu-latest
env:
PYTHON_VER: 3.9
steps:
- name: Checkout code
uses: actions/checkout@v3
- name: Setup Conda
uses: s-weigand/setup-conda@v1
with:
activate-conda: false
conda-channels: conda-forge
- name: Python setup
shell: bash -l {0}
run: |
conda create --name TEST python=${{ env.PYTHON_VER }} numpy cython pip hdf5 libnetcdf cftime netcdf4 --strict-channel-priority
source activate TEST
export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config
pip install -e . --no-deps --force-reinstall
- name: Install dependencies
shell: bash -l {0}
run: |
source activate TEST
python -m pip install --upgrade pip wheel
pip install coverage pytest coveralls .
- name: Prepare data
run: |
source activate TEST
pytest mhkit/tests/river/test_io.py
pytest mhkit/tests/tidal/test_io.py
pytest mhkit/tests/wave/io/test_cdip.py
- name: Prepare Hindcast data
if: (needs.check-changes.outputs.should-run-hindcast == 'true')
run: |
# pytest tests/test_specific_file.py::TestClass::test_function
source activate TEST
pytest mhkit/tests/wave/io/hindcast/test_hindcast.py
pytest mhkit/tests/wave/io/hindcast/test_wind_toolkit.py
- name: Upload data as artifact
uses: actions/upload-artifact@v3
with:
name: data
path: ~/.cache/mhkit
conda-build:
name: conda-${{ matrix.os }}/${{ matrix.python-version }}
needs: [set-os, prepare-cache]
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: ${{fromJson(needs.set-os.outputs.matrix_os)}}
python-version: ["3.8", "3.9", "3.10", "3.11"]
env:
PYTHON_VER: ${{ matrix.python-version }}
steps:
- uses: actions/checkout@v3
- name: Setup Conda
uses: s-weigand/setup-conda@v1
with:
activate-conda: false
conda-channels: conda-forge
- name: Python ${{ matrix.python-version }}
shell: bash -l {0}
run: |
conda create --name TEST python=${PYTHON_VER} numpy cython pip hdf5 libnetcdf cftime netcdf4 --strict-channel-priority
source activate TEST
export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config
pip install -e . --no-deps --force-reinstall
- name: Install dependencies
shell: bash -l {0}
run: |
source activate TEST
python -m pip install --upgrade pip wheel
pip install coverage pytest coveralls .
- name: Download data from artifact
uses: actions/download-artifact@v3
with:
name: data
path: ~/.cache/mhkit
- name: Run pytest
shell: bash -l {0}
run: |
source activate TEST
coverage run --rcfile=.github/workflows/.coveragerc --source=./mhkit/ -m pytest -c .github/workflows/pytest.ini
- name: Upload coverage data to coveralls.io
shell: bash -l {0}
run: |
source activate TEST
coveralls --service=github
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_FLAG_NAME: ${{ matrix.python-version }}
COVERALLS_PARALLEL: true
pip-build:
name: pip-${{ matrix.os }}/${{ matrix.python-version }}
needs: [set-os, prepare-cache]
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: ${{fromJson(needs.set-os.outputs.matrix_os)}}
python-version: ["3.8", "3.9", "3.10", "3.11"]
steps:
- uses: conda-incubator/setup-miniconda@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python-version }}
- name: Set up Git repository
uses: actions/checkout@v3
- name: Download data from artifact
uses: actions/download-artifact@v3
with:
name: data
path: ~/.cache/mhkit
- name: Update and install packages
run: |
python -m pip install --upgrade pip wheel
pip install coverage pytest coveralls .
- name: Run pytest
run: |
coverage run --rcfile=.github/workflows/.coveragerc --source=./mhkit/ -m pytest -c .github/workflows/pytest.ini
- name: Upload coverage data to coveralls.io
run: coveralls --service=github
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_FLAG_NAME: ${{ matrix.python-version }}
COVERALLS_PARALLEL: true
hindcast-calls:
name: hindcast-${{ matrix.os }}/${{ matrix.python-version }}
needs: [check-changes, prepare-cache, set-os]
if: (needs.check-changes.outputs.should-run-hindcast == 'true')
runs-on: ${{ matrix.os }}
strategy:
max-parallel: 1
fail-fast: false
matrix:
os: ${{fromJson(needs.set-os.outputs.matrix_os)}}
python-version: [3.8, 3.9, 3.10, 3.11]
steps:
- uses: actions/checkout@v3
- name: Setup Conda
uses: s-weigand/setup-conda@v1
with:
activate-conda: false
conda-channels: conda-forge
- name: Python ${{ matrix.python-version }}
shell: bash -l {0}
run: |
conda create --name TEST python=${{ matrix.python-version }} numpy cython pip pytest hdf5 libnetcdf cftime netcdf4 coverage --strict-channel-priority
source activate TEST
export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config
pip install -e . --no-deps --force-reinstall
- name: Download data from artifact
uses: actions/download-artifact@v3
with:
name: data
path: ~/.cache/mhkit
- name: Install MHKiT and run pytest
shell: bash -l {0}
run: |
source activate TEST
python -m pip install --upgrade pip wheel
pip install coveralls .
coverage run --rcfile=.github/workflows/.coveragehindcastrc -m pytest -c .github/workflows/pytest-hindcast.ini
- name: Upload coverage data to coveralls.io
shell: bash -l {0}
run: |
source activate TEST
coveralls --service=github
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_FLAG_NAME: ${{ matrix.python-version }}
COVERALLS_PARALLEL: true
coveralls:
name: Indicate completion to coveralls.io
needs: [conda-build, pip-build, hindcast-calls]
if: |
always() &&
needs.conda-build.result == 'success' &&
needs.pip-build.result == 'success' &&
(needs.hindcast-calls.result == 'success' || needs.hindcast-calls.result == 'skipped')
runs-on: ubuntu-latest
container: python:3-slim
steps:
- name: Finished
run: |
pip3 install --upgrade coveralls
coveralls --finish
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}