Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

[Harmonizome-ML]: Table produced by does not look right... #542

Open
AviMaayan opened this issue Mar 8, 2021 · 1 comment
Open

[Harmonizome-ML]: Table produced by does not look right... #542

AviMaayan opened this issue Mar 8, 2021 · 1 comment
Assignees
@u8sand

Comments

@AviMaayan
Copy link
Contributor

Downloading the table produced by this appyter report, all entries under the "predicted" column appear as zeros...

https://appyters.maayanlab.cloud/harmonizome_ml/5182e1b7398a656476dbb616992e1701ce92dbe6/
@u8sand
Copy link
Collaborator

u8sand commented Mar 8, 2021 •
edited
Loading

This isn't really a 'bug' per-say but more a failure of the chosen model to perform well; if you check the model is just terrible and predicts everything to be 0.

image

What is a bug is that the class imbalance is skewing the reported ROC/AUC resulting in misleadingly "good" classifier performance.

@u8sand u8sand changed the title Table produced by Harmonizome-ML does not look right... [Harmonizome-ML]: Table produced by does not look right... Jun 10, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@u8sand u8sand

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@u8sand @AviMaayan