PlantSEED Feature Viewer

[samseaver]

This page will have a single tab, showing the meta data for a feature, its sequences, function, subsystems, and similarities.

I will create two separate similarities objects, one that shows the plant similarities, for which we will create a table (i.e. not use CompareRegions, it's redundant) and then a second similarities object for prokaryotes, for which we will use the CompareRegions.

It is in this page that we will allow a user to edit a feature. The user will be able to change the function of a feature, and click on "Save" to update the parent genome. In this way, we will be able to ask the user to then re-reconstruct a genome, and observe whether new reactions have been added.

[samseaver]

Commenting here that I've added a spec for the regions object which, in theory, contains all the information that Neal needs to build a single instance of the CompareRegions widget.

We will still edit features in this page, but I will add a 'save_feature' function to ProbModelSEEDImpl.pm that will be called with the updated attributes. It'll have to update both the parent genome and the minimal genome object.