From dc9973b4c8ed5e0e200753c5a2b9da86771f63c5 Mon Sep 17 00:00:00 2001
From: verku <verena.kutschera@scilifelab.se>
Date: Thu, 12 Sep 2024 13:37:01 +0200
Subject: [PATCH] Add apptainer options to config_plugin_dardel.yaml

---
 .../slurm/profile/config_plugin_dardel.yaml                     | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/utilities/mutational_load_snpeff/slurm/profile/config_plugin_dardel.yaml b/utilities/mutational_load_snpeff/slurm/profile/config_plugin_dardel.yaml
index 32cb4b9..8c0f641 100644
--- a/utilities/mutational_load_snpeff/slurm/profile/config_plugin_dardel.yaml
+++ b/utilities/mutational_load_snpeff/slurm/profile/config_plugin_dardel.yaml
@@ -4,6 +4,8 @@ executor: slurm
 jobs: 100
 printshellcmds: true
 software-deployment-method: apptainer
+use-apptainer: True
+apptainer-args: "-B $PWD"
 
 # slurm resources
 ## default-resources: applied to all jobs, overruled by resources defined below for jobs