diff --git a/pages/containers/containers-4-managing-containers.md b/pages/containers/containers-4-managing-containers.md index dcbbbea2..90dd37dc 100644 --- a/pages/containers/containers-4-managing-containers.md +++ b/pages/containers/containers-4-managing-containers.md @@ -68,11 +68,11 @@ directory on your host system. Say that we are interested in getting the resulting html reports from FastQC in our container. We can do this by mounting a directory called, say, -`fastqc_results` in your current directory to the `/course/results/` +`fastqc_results` in your current directory to the `/course/results/fastqc` directory in the container. Try this out by running: ```bash -docker run --rm -v $(pwd)/fastqc_results:/course/results/ my_docker_conda +docker run --rm -v $(pwd)/fastqc_results:/course/results/fastqc my_docker_conda ``` Here the `-v` flag to docker run specifies the bind mount in the form of