UC 13: Leverage functionally equivalent pipelines for long-reads data on different systems

[jackDiGi]

Working with Owen Hirschi and Mike Schatz to finalize this use case.

Curated various email threads and discussions into a draft one pager - under revisions in google docs. Will post here once finalized.

[jackDiGi]

very late posting, but this is the one-pager completed on 13 July 2021

[cottonva]

Platforms involved: AnVIL & Kids First
scientific lead: Owen Hirschi & Sharon Plon
Platform lead: Mike Schatz & Jack DiGiovanna
One pager description: what research question to be answered, plan of data use and analysis -
Specify the NCPI interoperability use case: https://commonfund.nih.gov/kidsfirst/longreadprojects
Funding resources: Kids First DRC parent award + Kids First sequencing centers

[linikujp]

Changed the label to "need one pager", as the link to specify NCPI interoperability use case is not clear. @cottonva

[jackDiGi]

the one-pager is available - linked in a comment on Sept 3 @linikujp

[linikujp]

@jackDiGi can you double check if the interoperability use case tech plan is complete. See my comment on Oct 6.

[jackDiGi]

Interop use case is
as a researcher, I want to run the same tool on multiple environments (federated, functionally-equivalent compute), such that I can analyze datasets which are restricted to specific locations.

The such that could also be

• my analysis is more efficient
• my egress charges / effort / logistics are minimized
• my costs are distributed among multiple funding sources

Does this capture what's missing @linikujp & @NoopDog