From 9238feb32b8991630bed2fe7876a0886f3d4ef81 Mon Sep 17 00:00:00 2001 From: Delphine Lariviere Date: Fri, 30 Oct 2020 12:05:21 -0400 Subject: [PATCH 1/2] Update of FHIR tutorial I updated the tutorial, with a notebook focusing on querying FHIR Servers. More notebooks will come for the creation/ modification of data models, and data management. This tutorial query dbgap server, and a test server provided by HL7. It uses FHIR version 4, SMART FHIR client, and the FHIR API. --- README.md | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index de2b6ce..7320d93 100644 --- a/README.md +++ b/README.md @@ -1,10 +1,8 @@ # 🔥 FHIR 101 - A Practical Guide -[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/fhir-sci/fhir-101/master?filepath=FHIR%20101%20-%20Practical%20Guide.ipynb) - ## Quickstart -Check out the live [FHIR 101 Jupyter Notebook 📓](https://mybinder.org/v2/gh/fhir-sci/fhir-101/master?filepath=FHIR%20101%20-%20Practical%20Guide.ipynb) +Check out the live [FHIR Query 101 Colaboratory Notebook 📓](https://colab.research.google.com/drive/1nIGKjrGpmi7vhWqpbaGHE3DoJf5OKp8-?usp=sharing) ## Hello there! @@ -18,7 +16,7 @@ then this guide is for you :) ## What is this Guide? The FHIR 101 guide is an online Jupyter Notebook deployed with -[Binder](http://mybinder.org/). That means its publically hosted and +[Google Colaboratory](https://colab.research.google.com/notebooks/intro.ipynb). That means its publically hosted and you can play with it in your browser. The primary purpose of the notebook is to quickly educate you on what FHIR is From 5c9ebd50df2f7fad130bdbe12fb6fb0d507ed374 Mon Sep 17 00:00:00 2001 From: Delphine Lariviere Date: Fri, 30 Oct 2020 12:10:28 -0400 Subject: [PATCH 2/2] Change the description of the tutorial Changed README to include the description of the tutorial content --- README.md | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 7320d93..a6bd828 100644 --- a/README.md +++ b/README.md @@ -22,15 +22,16 @@ you can play with it in your browser. The primary purpose of the notebook is to quickly educate you on what FHIR is and to walk you through practical exercises that will teach you the FHIR basics: -- Create and validate a FHIR data model for an entity -- Add/remove attributes to/from an entity in the model -- Create attributes which are constrained by ontologies -- Make entity attributes searchable in the FHIR server -- Deploy the FHIR data model into a FHIR server -- Load data into the FHIR server which conforms to the model -- Search for data in the FHIR server +- What is FHIR +- What do the data look like +- How to use Python to query databases +- How to use FHIR RESTful API to identify the data model and query the server You can read through the notebook to learn about FHIR concepts and execute notebook code cells in the tutorial section to see practical examples. +More Notebooks are coming to learn how to create or modify the data model, +and how manage the data linked to the model. + + Read more about Jupyter Notebook [here](https://jupyter-notebook.readthedocs.io/en/stable/)