CHANGELOG.md

0.2.10

Modified the deloyement of subworkflows to allow or concurrent versions of core and/or the subworkflows to be used on the same system without clashes Update validate to 0.2.7

0.2.9

Fix grapetree crash with null distance matrix

0.2.8

Fix a issue were cluster would not appear in the trees for orphan "clusters"

0.2.7

Add trees in Newick format to the cluster sheets Fix test DB in test configuration

0.2.6

Update validate to fix date parsing and better handling of isolates with lots of plasmids

0.2.5

Update BakCharak Known Issue: Workflow is not working with snakemake8 for the time being. Make sure you use snakemake7.

0.2.4

Fix funky run order

0.2.3

Now register run name (Workdir name) in the run sheet Now waits for all critical steps to finish before commiting to database Bump validate to 0.2.5 Bump chewie to 0.3.2

0.2.2

Bump geuebt-chewie to 0.3.1

0.2.1

Bump geuebt-validate to 0.2.1

0.1.8

Bump validate module to 0.1.1

0.1.7

• Fix organism name in cluster sheets
• Validate bump to 0.1.7

0.1.6

• Fix sample sheet creation when mutliple organisms present in dataset
• Fix creation of empty cluster and isolates desription files when the database is initially empty

0.1.5

Bump geuebt-validate to v0.1.6

0.1.4

Bump geuebt-validate to v0.1.5

0.1.3

Fix generation of files for chewie when the database is initally empty

0.1.2

Bump geuebt-chewie to v0.3.0

0.1.1

Will reject samples whose field 'isolate_id' is already used in the database. THis effectivaly happens after qc validation so it will be visible only for those samples that pass qc.

0.1.0

First release