diff --git a/workflow/rules/aquamis.smk b/workflow/rules/aquamis.smk index 8aeeec3..68c88b7 100644 --- a/workflow/rules/aquamis.smk +++ b/workflow/rules/aquamis.smk @@ -31,7 +31,7 @@ rule consolidate_ids: output: sample_sheet="sample_sheet/samples_isolate_ids.tsv", conda: - "../envs/pandas.yaml", + "../envs/pandas.yaml" log: "logs/consolidate_ids.log", script: diff --git a/workflow/scripts/consolidate_ids.py b/workflow/scripts/consolidate_ids.py index 67757b5..fb9b8f5 100644 --- a/workflow/scripts/consolidate_ids.py +++ b/workflow/scripts/consolidate_ids.py @@ -12,8 +12,6 @@ pass -import os -from pathlib import Path import pandas as pd