how to import the blastkoala results to MetQy

[cabraham03]

Hi, I have some bacteria genomes (Vibrio vulnificus strains), it was assembled using Spades, and then I use the generated contigs to generate a file.faa using prokka, an then I used it to generate a list of KO in blastKOALA.

my question is, it is possible to analyze those data with MetQy ? does anyone have a pipeline ??? or an example for bacteria genomes ??

Thanks so much

[asmvernon]

Hi Abraham, Could you provide more info about the analysis you want to do? What is the expected outcome or the question you're trying to answer? All the best, Andrea

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-- Sent from Android Andrea Martinez Vernon, PhD LinkedIn: https://www.linkedin.com/in/andrea-martinez-vernon/

On Wed, 9 Jun 2021, 10:36 pm Abraham, ***@***.***> wrote: Hi, I have some bacteria genomes (Vibrio vulnificus strains), it was assembled using Spades, and then I use the generated contigs to generate a file.faa using prokka, an then I used it to generate a list of KO in blastKOALA. my question is, it is possible to analyze those data with MetQy ? does anyone have a pipeline ??? or an example for bacteria genomes ?? Thanks so much — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#7>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACXX6PLVRTZZX4O5JT2O4MLTR7NFJANCNFSM46M3Q2TQ> .