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Welcome to the MetQy wiki!

MetQy is a R package to ease interfacing with the Kyoto Encyclopedia of Genes and Genomes (KEGG) database to query metabolic functions of genes and genomes. As discussed in detail in the associated paper (see above), MetQy can be used to convert key parts of the data contained in the KEGG database into R data structures, and perform analyses on this data.

Browse the side bar for information about this R package!

There are pages describing the relevant KEGG databases for this package, as well as introductory info and usage for the four types of functions:

• Query
• Parsing
• Visualization
• Analysis

Remember to look at the MetQy package documentation (pdf) for more details and information about the functions.

CITE US

Please cite:

    Andrea Martinez-Vernon, Fred Farrell, Orkun Soyer. MetQy: an R package to query metabolic functions of genes and genomes. 
        bioRxiv - https://www.biorxiv.org/content/early/2017/11/16/215525

https://www.biorxiv.org/content/early/2017/11/16/215525

Commercial use

MetQy is a free software for academic purposes. If interested in commercial use, please read the LICENCE and contact Warwick Ventures