From d6a85971cc432c589c740d7566397d4626771fed Mon Sep 17 00:00:00 2001
From: Ryan Lim <rlim@chanzuckerberg.com>
Date: Wed, 26 Apr 2023 11:42:30 -0700
Subject: [PATCH] handle empty output from fastp

---
 src/stats.cpp | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/src/stats.cpp b/src/stats.cpp
index deca75c..986069b 100644
--- a/src/stats.cpp
+++ b/src/stats.cpp
@@ -850,7 +850,14 @@ void Stats::reportHtmlContents(ofstream& ofs, string filteringType, string readN
         } else {
             count = mBaseContents['G' & 0x07] + mBaseContents['C' & 0x07] ;
         }
-        string percentage = to_string((double)count * 100.0 / mBases);
+
+        string percentage;
+        if (mBases != 0) {
+            percentage = to_string((double)count * 100.0 / mBases);
+        } else {
+            percentage = "-nan";
+        }
+
         if(percentage.length()>5)
             percentage = percentage.substr(0,5);
         string name = base + "(" + percentage + "%)";