From 6b99a89d25e9e21af0e73c24d4a1ee3d13dbd502 Mon Sep 17 00:00:00 2001
From: Chris Wilkinson <c.wilkinson@elifesciences.org>
Date: Wed, 19 Jun 2024 16:46:40 +0100
Subject: [PATCH] Prefer Make to npm scripts

---
 Dockerfile        |   2 +-
 Makefile          |   8 +
 package-lock.json | 383 +---------------------------------------------
 package.json      |  10 +-
 4 files changed, 11 insertions(+), 392 deletions(-)
 create mode 100644 Makefile

diff --git a/Dockerfile b/Dockerfile
index 6fdb98e..709534c 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -7,7 +7,7 @@ COPY package.json \
 RUN npm ci --ignore-scripts
 COPY observablehq.config.js observablehq.config.js
 COPY src/ src/
-RUN npm run build
+RUN npx observable build
 
 FROM caddy AS prod
 COPY Caddyfile /etc/caddy/Caddyfile
diff --git a/Makefile b/Makefile
new file mode 100644
index 0000000..8da2578
--- /dev/null
+++ b/Makefile
@@ -0,0 +1,8 @@
+.PHONY: start
+
+node_modules: package.json package-lock.json
+	npm install
+	touch node_modules
+
+start: node_modules
+	npx observable preview
diff --git a/package-lock.json b/package-lock.json
index 7164696..9dd7f1e 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -13,8 +13,7 @@
         "@trivago/prettier-plugin-sort-imports": "^4.3.0",
         "prettier": "^3.3.2",
         "prettier-plugin-sh": "^0.14.0",
-        "prettier-plugin-toml": "^2.0.1",
-        "rimraf": "^5.0.5"
+        "prettier-plugin-toml": "^2.0.1"
       },
       "engines": {
         "node": ">=18"
@@ -677,63 +676,6 @@
         "node": ">=12"
       }
     },
-    "node_modules/@isaacs/cliui": {
-      "version": "8.0.2",
-      "resolved": "https://registry.npmjs.org/@isaacs/cliui/-/cliui-8.0.2.tgz",
-      "integrity": "sha512-O8jcjabXaleOG9DQ0+ARXWZBTfnP4WNAqzuiJK7ll44AmxGKv/J2M4TPjxjY3znBCfvBXFzucm1twdyFybFqEA==",
-      "dev": true,
-      "dependencies": {
-        "string-width": "^5.1.2",
-        "string-width-cjs": "npm:string-width@^4.2.0",
-        "strip-ansi": "^7.0.1",
-        "strip-ansi-cjs": "npm:strip-ansi@^6.0.1",
-        "wrap-ansi": "^8.1.0",
-        "wrap-ansi-cjs": "npm:wrap-ansi@^7.0.0"
-      },
-      "engines": {
-        "node": ">=12"
-      }
-    },
-    "node_modules/@isaacs/cliui/node_modules/emoji-regex": {
-      "version": "9.2.2",
-      "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-9.2.2.tgz",
-      "integrity": "sha512-L18DaJsXSUk2+42pv8mLs5jJT2hqFkFE4j21wOmgbUqsZ2hL72NsUU785g9RXgo3s0ZNgVl42TiHp3ZtOv/Vyg==",
-      "dev": true
-    },
-    "node_modules/@isaacs/cliui/node_modules/string-width": {
-      "version": "5.1.2",
-      "resolved": "https://registry.npmjs.org/string-width/-/string-width-5.1.2.tgz",
-      "integrity": "sha512-HnLOCR3vjcY8beoNLtcjZ5/nxn2afmME6lhrDrebokqMap+XbeW8n9TXpPDOqdGK5qcI3oT0GKTW6wC7EMiVqA==",
-      "dev": true,
-      "dependencies": {
-        "eastasianwidth": "^0.2.0",
-        "emoji-regex": "^9.2.2",
-        "strip-ansi": "^7.0.1"
-      },
-      "engines": {
-        "node": ">=12"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/sindresorhus"
-      }
-    },
-    "node_modules/@isaacs/cliui/node_modules/wrap-ansi": {
-      "version": "8.1.0",
-      "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-8.1.0.tgz",
-      "integrity": "sha512-si7QWI6zUMq56bESFvagtmzMdGOtoxfR+Sez11Mobfc7tm+VkUckk9bW2UeffTGVUbOksxmSw0AA2gs8g71NCQ==",
-      "dev": true,
-      "dependencies": {
-        "ansi-styles": "^6.1.0",
-        "string-width": "^5.0.1",
-        "strip-ansi": "^7.0.1"
-      },
-      "engines": {
-        "node": ">=12"
-      },
-      "funding": {
-        "url": "https://github.com/chalk/wrap-ansi?sponsor=1"
-      }
-    },
     "node_modules/@jridgewell/gen-mapping": {
       "version": "0.3.5",
       "resolved": "https://registry.npmjs.org/@jridgewell/gen-mapping/-/gen-mapping-0.3.5.tgz",
@@ -874,16 +816,6 @@
         "node": ">=14.5.0"
       }
     },
-    "node_modules/@pkgjs/parseargs": {
-      "version": "0.11.0",
-      "resolved": "https://registry.npmjs.org/@pkgjs/parseargs/-/parseargs-0.11.0.tgz",
-      "integrity": "sha512-+1VkjdD0QBLPodGrJUeqarH8VAIvQODIbwh9XpP5Syisf7YoQgsJKPNFoqqLQlu+VQ/tVSshMR6loPMn8U+dPg==",
-      "dev": true,
-      "optional": true,
-      "engines": {
-        "node": ">=14"
-      }
-    },
     "node_modules/@rollup/plugin-commonjs": {
       "version": "25.0.8",
       "resolved": "https://registry.npmjs.org/@rollup/plugin-commonjs/-/plugin-commonjs-25.0.8.tgz",
@@ -1430,24 +1362,6 @@
         "node": ">=8"
       }
     },
-    "node_modules/color-convert": {
-      "version": "2.0.1",
-      "resolved": "https://registry.npmjs.org/color-convert/-/color-convert-2.0.1.tgz",
-      "integrity": "sha512-RRECPsj7iu/xb5oKYcsFHSppFNnsj/52OVTRKb4zP5onXwVF3zVmmToNcOfGC+CRDpfK/U584fMg38ZHCaElKQ==",
-      "dev": true,
-      "dependencies": {
-        "color-name": "~1.1.4"
-      },
-      "engines": {
-        "node": ">=7.0.0"
-      }
-    },
-    "node_modules/color-name": {
-      "version": "1.1.4",
-      "resolved": "https://registry.npmjs.org/color-name/-/color-name-1.1.4.tgz",
-      "integrity": "sha512-dOy+3AuW3a2wNbZHIuMZpTcgjGuLU/uBL/ubcZF9OXbDo8ff4O8yVp5Bf0efS8uEoYo5q4Fx7dY9OgQGXgAsQA==",
-      "dev": true
-    },
     "node_modules/combined-stream": {
       "version": "1.0.8",
       "resolved": "https://registry.npmjs.org/combined-stream/-/combined-stream-1.0.8.tgz",
@@ -1686,12 +1600,6 @@
         "npm": "1.2.8000 || >= 1.4.16"
       }
     },
-    "node_modules/eastasianwidth": {
-      "version": "0.2.0",
-      "resolved": "https://registry.npmjs.org/eastasianwidth/-/eastasianwidth-0.2.0.tgz",
-      "integrity": "sha512-I88TYZWc9XiYHRQ4/3c5rjjfgkjhLyW2luGIheGERbNQ6OY7yTybanSpDXZa8y7VUP9YmDcYa+eyq4ca7iLqWA==",
-      "dev": true
-    },
     "node_modules/ee-first": {
       "version": "1.1.1",
       "resolved": "https://registry.npmjs.org/ee-first/-/ee-first-1.1.1.tgz",
@@ -1839,22 +1747,6 @@
         "url": "https://github.com/sponsors/sindresorhus"
       }
     },
-    "node_modules/foreground-child": {
-      "version": "3.2.1",
-      "resolved": "https://registry.npmjs.org/foreground-child/-/foreground-child-3.2.1.tgz",
-      "integrity": "sha512-PXUUyLqrR2XCWICfv6ukppP96sdFwWbNEnfEMt7jNsISjMsvaLNinAHNDYyvkyU+SZG2BTSbT5NjG+vZslfGTA==",
-      "dev": true,
-      "dependencies": {
-        "cross-spawn": "^7.0.0",
-        "signal-exit": "^4.0.1"
-      },
-      "engines": {
-        "node": ">=14"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/isaacs"
-      }
-    },
     "node_modules/form-data": {
       "version": "4.0.0",
       "resolved": "https://registry.npmjs.org/form-data/-/form-data-4.0.0.tgz",
@@ -2146,15 +2038,6 @@
         "node": ">=0.10.0"
       }
     },
-    "node_modules/is-fullwidth-code-point": {
-      "version": "3.0.0",
-      "resolved": "https://registry.npmjs.org/is-fullwidth-code-point/-/is-fullwidth-code-point-3.0.0.tgz",
-      "integrity": "sha512-zymm5+u+sCsSWyD9qNaejV3DFvhCKclKdizYaJUuHA83RLjb7nSuGnddCHGv0hk+KY7BMAlsWeK4Ueg6EV6XQg==",
-      "dev": true,
-      "engines": {
-        "node": ">=8"
-      }
-    },
     "node_modules/is-inside-container": {
       "version": "1.0.0",
       "resolved": "https://registry.npmjs.org/is-inside-container/-/is-inside-container-1.0.0.tgz",
@@ -2219,24 +2102,6 @@
       "resolved": "https://registry.npmjs.org/isoformat/-/isoformat-0.2.1.tgz",
       "integrity": "sha512-tFLRAygk9NqrRPhJSnNGh7g7oaVWDwR0wKh/GM2LgmPa50Eg4UfyaCO4I8k6EqJHl1/uh2RAD6g06n5ygEnrjQ=="
     },
-    "node_modules/jackspeak": {
-      "version": "3.4.0",
-      "resolved": "https://registry.npmjs.org/jackspeak/-/jackspeak-3.4.0.tgz",
-      "integrity": "sha512-JVYhQnN59LVPFCEcVa2C3CrEKYacvjRfqIQl+h8oi91aLYQVWRYbxjPcv1bUiUy/kLmQaANrYfNMCO3kuEDHfw==",
-      "dev": true,
-      "dependencies": {
-        "@isaacs/cliui": "^8.0.2"
-      },
-      "engines": {
-        "node": ">=14"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/isaacs"
-      },
-      "optionalDependencies": {
-        "@pkgjs/parseargs": "^0.11.0"
-      }
-    },
     "node_modules/javascript-natural-sort": {
       "version": "0.7.1",
       "resolved": "https://registry.npmjs.org/javascript-natural-sort/-/javascript-natural-sort-0.7.1.tgz",
@@ -2353,15 +2218,6 @@
       "integrity": "sha512-v2kDEe57lecTulaDIuNTPy3Ry4gLGJ6Z1O3vE1krgXZNrsQ+LFTGHVxVjcXPs17LhbZVGedAJv8XZ1tvj5FvSg==",
       "dev": true
     },
-    "node_modules/lru-cache": {
-      "version": "10.2.2",
-      "resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-10.2.2.tgz",
-      "integrity": "sha512-9hp3Vp2/hFQUiIwKo8XCeFVnrg8Pk3TYNPIR7tJADKi5YfcF7vEaK7avFHTlSy3kOKYaJQaalfEo6YuXdceBOQ==",
-      "dev": true,
-      "engines": {
-        "node": "14 || >=16.14"
-      }
-    },
     "node_modules/magic-string": {
       "version": "0.30.10",
       "resolved": "https://registry.npmjs.org/magic-string/-/magic-string-0.30.10.tgz",
@@ -2454,15 +2310,6 @@
         "node": ">=10"
       }
     },
-    "node_modules/minipass": {
-      "version": "7.1.2",
-      "resolved": "https://registry.npmjs.org/minipass/-/minipass-7.1.2.tgz",
-      "integrity": "sha512-qOOzS1cBTWYF4BH8fVePDBOO9iptMnGUEZwNc/cMWnTV2nVLZ7VoNWEPHkYczZA0pdoA7dl6e7FL659nX9S2aw==",
-      "dev": true,
-      "engines": {
-        "node": ">=16 || 14 >=14.17"
-      }
-    },
     "node_modules/minisearch": {
       "version": "6.3.0",
       "resolved": "https://registry.npmjs.org/minisearch/-/minisearch-6.3.0.tgz",
@@ -2515,12 +2362,6 @@
         "url": "https://github.com/sponsors/sindresorhus"
       }
     },
-    "node_modules/package-json-from-dist": {
-      "version": "1.0.0",
-      "resolved": "https://registry.npmjs.org/package-json-from-dist/-/package-json-from-dist-1.0.0.tgz",
-      "integrity": "sha512-dATvCeZN/8wQsGywez1mzHtTlP22H8OEfPrVMLNr4/eGa+ijtLn/6M5f0dY8UKNrC2O9UCU6SSoG3qRKnt7STw==",
-      "dev": true
-    },
     "node_modules/pako": {
       "version": "1.0.11",
       "resolved": "https://registry.npmjs.org/pako/-/pako-1.0.11.tgz",
@@ -2550,22 +2391,6 @@
       "resolved": "https://registry.npmjs.org/path-parse/-/path-parse-1.0.7.tgz",
       "integrity": "sha512-LDJzPVEEEPR+y48z93A0Ed0yXb8pAByGWo/k5YYdYgpY2/2EsOsksJrq7lOHxryrVOn1ejG6oAp8ahvOIQD8sw=="
     },
-    "node_modules/path-scurry": {
-      "version": "1.11.1",
-      "resolved": "https://registry.npmjs.org/path-scurry/-/path-scurry-1.11.1.tgz",
-      "integrity": "sha512-Xa4Nw17FS9ApQFJ9umLiJS4orGjm7ZzwUrwamcGQuHSzDyth9boKDaycYdDcZDuqYATXw4HFXgaqWTctW/v1HA==",
-      "dev": true,
-      "dependencies": {
-        "lru-cache": "^10.2.0",
-        "minipass": "^5.0.0 || ^6.0.2 || ^7.0.0"
-      },
-      "engines": {
-        "node": ">=16 || 14 >=14.18"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/isaacs"
-      }
-    },
     "node_modules/picocolors": {
       "version": "1.0.1",
       "resolved": "https://registry.npmjs.org/picocolors/-/picocolors-1.0.1.tgz",
@@ -2743,62 +2568,6 @@
         "url": "https://github.com/privatenumber/resolve-pkg-maps?sponsor=1"
       }
     },
-    "node_modules/rimraf": {
-      "version": "5.0.7",
-      "resolved": "https://registry.npmjs.org/rimraf/-/rimraf-5.0.7.tgz",
-      "integrity": "sha512-nV6YcJo5wbLW77m+8KjH8aB/7/rxQy9SZ0HY5shnwULfS+9nmTtVXAJET5NdZmCzA4fPI/Hm1wo/Po/4mopOdg==",
-      "dev": true,
-      "dependencies": {
-        "glob": "^10.3.7"
-      },
-      "bin": {
-        "rimraf": "dist/esm/bin.mjs"
-      },
-      "engines": {
-        "node": ">=14.18"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/isaacs"
-      }
-    },
-    "node_modules/rimraf/node_modules/glob": {
-      "version": "10.4.2",
-      "resolved": "https://registry.npmjs.org/glob/-/glob-10.4.2.tgz",
-      "integrity": "sha512-GwMlUF6PkPo3Gk21UxkCohOv0PLcIXVtKyLlpEI28R/cO/4eNOdmLk3CMW1wROV/WR/EsZOWAfBbBOqYvs88/w==",
-      "dev": true,
-      "dependencies": {
-        "foreground-child": "^3.1.0",
-        "jackspeak": "^3.1.2",
-        "minimatch": "^9.0.4",
-        "minipass": "^7.1.2",
-        "package-json-from-dist": "^1.0.0",
-        "path-scurry": "^1.11.1"
-      },
-      "bin": {
-        "glob": "dist/esm/bin.mjs"
-      },
-      "engines": {
-        "node": ">=16 || 14 >=14.18"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/isaacs"
-      }
-    },
-    "node_modules/rimraf/node_modules/minimatch": {
-      "version": "9.0.4",
-      "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-9.0.4.tgz",
-      "integrity": "sha512-KqWh+VchfxcMNRAJjj2tnsSJdNbHsVgnkBhTNrW7AjVo6OvLtxw8zfT9oLw1JSohlFzJ8jCoTgaoXvJ+kHt6fw==",
-      "dev": true,
-      "dependencies": {
-        "brace-expansion": "^2.0.1"
-      },
-      "engines": {
-        "node": ">=16 || 14 >=14.17"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/isaacs"
-      }
-    },
     "node_modules/rollup": {
       "version": "4.18.0",
       "resolved": "https://registry.npmjs.org/rollup/-/rollup-4.18.0.tgz",
@@ -3012,18 +2781,6 @@
         "node": ">=8"
       }
     },
-    "node_modules/signal-exit": {
-      "version": "4.1.0",
-      "resolved": "https://registry.npmjs.org/signal-exit/-/signal-exit-4.1.0.tgz",
-      "integrity": "sha512-bzyZ1e88w9O1iNJbKnOlvYTrWPDl46O1bG0D3XInv+9tkPrxrN8jUUTiFlDkkmKWgn1M6CfIA13SuGqOa9Korw==",
-      "dev": true,
-      "engines": {
-        "node": ">=14"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/isaacs"
-      }
-    },
     "node_modules/sisteransi": {
       "version": "1.0.5",
       "resolved": "https://registry.npmjs.org/sisteransi/-/sisteransi-1.0.5.tgz",
@@ -3096,48 +2853,6 @@
         "url": "https://github.com/sponsors/sindresorhus"
       }
     },
-    "node_modules/string-width-cjs": {
-      "name": "string-width",
-      "version": "4.2.3",
-      "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz",
-      "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==",
-      "dev": true,
-      "dependencies": {
-        "emoji-regex": "^8.0.0",
-        "is-fullwidth-code-point": "^3.0.0",
-        "strip-ansi": "^6.0.1"
-      },
-      "engines": {
-        "node": ">=8"
-      }
-    },
-    "node_modules/string-width-cjs/node_modules/ansi-regex": {
-      "version": "5.0.1",
-      "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
-      "integrity": "sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ==",
-      "dev": true,
-      "engines": {
-        "node": ">=8"
-      }
-    },
-    "node_modules/string-width-cjs/node_modules/emoji-regex": {
-      "version": "8.0.0",
-      "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz",
-      "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==",
-      "dev": true
-    },
-    "node_modules/string-width-cjs/node_modules/strip-ansi": {
-      "version": "6.0.1",
-      "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz",
-      "integrity": "sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==",
-      "dev": true,
-      "dependencies": {
-        "ansi-regex": "^5.0.1"
-      },
-      "engines": {
-        "node": ">=8"
-      }
-    },
     "node_modules/strip-ansi": {
       "version": "7.1.0",
       "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-7.1.0.tgz",
@@ -3152,28 +2867,6 @@
         "url": "https://github.com/chalk/strip-ansi?sponsor=1"
       }
     },
-    "node_modules/strip-ansi-cjs": {
-      "name": "strip-ansi",
-      "version": "6.0.1",
-      "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz",
-      "integrity": "sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==",
-      "dev": true,
-      "dependencies": {
-        "ansi-regex": "^5.0.1"
-      },
-      "engines": {
-        "node": ">=8"
-      }
-    },
-    "node_modules/strip-ansi-cjs/node_modules/ansi-regex": {
-      "version": "5.0.1",
-      "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
-      "integrity": "sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ==",
-      "dev": true,
-      "engines": {
-        "node": ">=8"
-      }
-    },
     "node_modules/strip-bom-string": {
       "version": "1.0.0",
       "resolved": "https://registry.npmjs.org/strip-bom-string/-/strip-bom-string-1.0.0.tgz",
@@ -3791,80 +3484,6 @@
         "url": "https://github.com/chalk/wrap-ansi?sponsor=1"
       }
     },
-    "node_modules/wrap-ansi-cjs": {
-      "name": "wrap-ansi",
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diff --git a/package.json b/package.json
index 285fa9c..e5013ee 100644
--- a/package.json
+++ b/package.json
@@ -1,13 +1,6 @@
 {
   "type": "module",
   "private": true,
-  "scripts": {
-    "clean": "rimraf src/.observablehq/cache",
-    "build": "rimraf dist && observable build",
-    "dev": "observable preview",
-    "deploy": "observable deploy",
-    "observable": "observable"
-  },
   "dependencies": {
     "@observablehq/framework": "^1.9.0",
     "d3-dsv": "^3.0.1",
@@ -17,8 +10,7 @@
     "@trivago/prettier-plugin-sort-imports": "^4.3.0",
     "prettier": "^3.3.2",
     "prettier-plugin-sh": "^0.14.0",
-    "prettier-plugin-toml": "^2.0.1",
-    "rimraf": "^5.0.5"
+    "prettier-plugin-toml": "^2.0.1"
   },
   "engines": {
     "node": ">=18"