pyproject.toml

[build-system]
requires = ["setuptools", "versioneer[toml]"]
build-backend = "setuptools.build_meta"

[project]
name = "bidsgnostic"
description = "diagnose bids dataset"
readme = "README.md"
requires-python = ">=3.9"
license = { file="LICENSE" }
authors = [
  { name = "remi gau", email = "remi.gau@gmail.com" },
]
# url = pipeline["GeneratedBy"][0]["CodeURL"]
keywords = ["BIDS", "neuroimaging"]
classifiers = [
  "Development Status :: 3 - Alpha",
  "Environment :: Console",
  "Intended Audience :: Science/Research",
  "License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)",
  "Operating System :: OS Independent",
  "Programming Language :: Python",
  "Topic :: Scientific/Engineering",
]
dependencies = [
  "loguru",
  "plotly",
  "rich",
  "snakebids>=0.7.1",
  "snakemake",
  "ipywidgets>=7.0.0",
]
dynamic = ["version"]

[project.optional-dependencies]
doc = [
  "sphinx >=2.2, !=5.1.0",
  "numpydoc",
  "sphinx_rtd_theme",
  "myst_nb",
  "myst-parser",
  "rstcheck",
  "sphinx-argparse",
  "sphinx-copybutton",
]
test = [
  "tox",
  "pytest >=3.3",
  "pytest-cov",
  "coverage[toml]",
]
# Aliases
docs = ["pybids[doc]"]
tests = ["pybids[test]"]
dev = ["pybids[doc,test]"]

[project.urls]
Homepage = "https://github.com/Remi-Gau/bidsgnostic.git"
"Bug Tracker" = "https://github.com/Remi-Gau/bidsgnostic/issues"

[project.scripts]
bidsgnostic = "bidsgnostic.run:main"
bidsgnostic_layout = "bidsgnostic.run:main_group"

[tool.versioneer]
VCS = "git"
style = "pep440-pre"
versionfile_source = "bidsgnostic/_version.py"
versionfile_build = "bidsgnostic/_version.py"

[tool.coverage.run]
branch = true
source = ["bidsgnostic/*"]
include = ["bidsgnostic/*"]
omit = [
  "*/setup.py",
  "*/*version.py",
]

[tool.coverage.report]
include = ["bidsgnostic/*"]