diff --git a/docs/1.1/data-entities.md b/docs/1.1/data-entities.md index 9df4a1ac..1ca5e9a4 100644 --- a/docs/1.1/data-entities.md +++ b/docs/1.1/data-entities.md @@ -299,7 +299,25 @@ These can be included for File Data Entities as additional metadata, regardless ### Directories on the web; dataset distributions -A _Directory File Entry_ or [Dataset] identifier expressed as an absolute URL on the web can be harder to download than a [File] because it consists of multiple resources. It is RECOMMENDED that such directories have a complete listing of their content in [hasPart], enabling download traversal. +A _Directory File Entry_ or [Dataset] identifier expressed as an absolute URL on the web can be harder to download than a [File] because it consists of multiple resources. It is RECOMMENDED that such directories have a complete listing of their content in [hasPart], enabling download traversal: + +```json + { + "@id": "http://example.com/downloads/2020/", + "@type": "Dataset", + "name": "A directory with many small files", + "description": "This directory contains multiple small files.", + "hasPart": [ + { + "@id": "http://example.com/downloads/2020/file1.csv" + }, + { + "@id": "http://example.com/downloads/2020/file2.csv" + }, + ... + ] + } +``` Alternatively, a common mechanism to provide downloads of a reasonably sized directory is as an archive file in formats such as `.zip` or `.tar.gz`, described as a [DataDownload]. diff --git a/docs/1.2-DRAFT/context.jsonld b/docs/1.2-DRAFT/context.jsonld index bfcb8658..55ac9b27 100644 --- a/docs/1.2-DRAFT/context.jsonld +++ b/docs/1.2-DRAFT/context.jsonld @@ -2892,6 +2892,8 @@ "ResourceDescriptor": "http://www.w3.org/ns/dx/prof/ResourceDescriptor", "ResourceRole": "http://www.w3.org/ns/dx/prof/ResourceRole", "Profile": "http://www.w3.org/ns/dx/prof/Profile", + "Geometry": "http://www.opengis.net/ont/geosparql#Geometry", + "asWKT": "http://www.opengis.net/ont/geosparql#asWKT", "@label": "http://www.w3.org/2000/01/rdf-schema#label", "pcdm": "http://pcdm.org/models#", "bibo": "http://purl.org/ontology/bibo/", @@ -2913,6 +2915,7 @@ "roterms": "http://purl.org/ro/roterms#", "relation": "http://www.iana.org/assignments/relation/", "wf4ever": "http://purl.org/ro/wf4ever#", - "vann": "http://purl.org/vocab/vann/" + "vann": "http://purl.org/vocab/vann/", + "geosparql": "http://www.opengis.net/ont/geosparql#" } } diff --git a/docs/1.2-DRAFT/metadata.md b/docs/1.2-DRAFT/metadata.md index 5d6eeb2c..34b96dcf 100644 --- a/docs/1.2-DRAFT/metadata.md +++ b/docs/1.2-DRAFT/metadata.md @@ -143,6 +143,11 @@ These terms are being proposed by [Bioschemas profile ComputationalWorkflow 1.0- * `input` mapped to * `output` mapped to +To support geometry in [Places](contextual-entities.md#places), these terms from the [GeoSPARQL ontology]: + +* `Geometry` mapped to +* `asWKT` mapped to + {: .note } > In this specification the proposed Bioschemas terms use the temporary namespace; future releases of RO-Crate may reflect mapping to the namespace. diff --git a/docs/1.2-DRAFT/ro-crate-metadata.json b/docs/1.2-DRAFT/ro-crate-metadata.json index 629f3552..2c1eaab0 100644 --- a/docs/1.2-DRAFT/ro-crate-metadata.json +++ b/docs/1.2-DRAFT/ro-crate-metadata.json @@ -298,6 +298,12 @@ }, { "@id": "http://schema.org/Property" + }, + { + "@id": "http://www.opengis.net/ont/geosparql#Geometry" + }, + { + "@id": "http://www.opengis.net/ont/geosparql#asWKT" } ], "identifier": {"@id": "https://doi.org/DOI"}, @@ -345,6 +351,9 @@ { "@id": "#vocabulary-rdfs" }, + { + "@id": "#vocabulary-geosparql" + }, { "@id": "#specification" }, @@ -660,6 +669,44 @@ "name": "Vocabulary", "sameAs": "https://www.w3.org/TR/2019/NOTE-dx-prof-20191218/#Role:vocabulary" }, + { + "@id": "http://www.opengis.net/ont/geosparql#Geometry", + "@type": "DefinedTerm", + "description": "A coherent set of direct positions in space. The positions are held within a Spatial Reference System (SRS).", + "name": "Geometry", + "termCode": "Geometry", + "sameAs": "https://opengeospatial.github.io/ogc-geosparql/geosparql11/#Geometry", + "inDefinedTermSet": { + "@id": "http://www.opengis.net/ont/geosparql#" + } + }, + { + "@id": "http://www.opengis.net/ont/geosparql#asWKT", + "@type": "DefinedTerm", + "description": "The WKT (Well-Known Text) serialization (ISO13249) of a Geometry.", + "name": "Geometry", + "termCode": "asWKT", + "citation": { "@id": "https://portal.ogc.org/files/?artifact_id=25355" }, + "sameAs": "https://opengeospatial.github.io/ogc-geosparql/geosparql11/#asWKT", + "inDefinedTermSet": { + "@id": "http://www.opengis.net/ont/geosparql#" + } + }, + { + "@id": "https://portal.ogc.org/files/?artifact_id=25355", + "@type": "CreativeWork", + "name": "OpenGIS Implementation Specification for Geographic information – Simple feature access – Part 1: Common architecture", + "version": "1.2.1", + "url": "https://www.ogc.org/standard/sfa/" + }, + { + "@id": "http://www.opengis.net/ont/geosparql#", + "@type": "DefinedTermSet", + "name": "GeoSPARQL ontology", + "version": "1.1", + "sameAs": "https://opengeospatial.github.io/ogc-geosparql/geosparql11/", + "url": "https://opengeospatial.github.io/ogc-geosparql/geosparql11/spec.html" + }, { "@id": "http://www.w3.org/ns/json-ld#Context", "@type": "DefinedTerm", @@ -1873,7 +1920,18 @@ "hasRole": { "@id": "http://www.w3.org/ns/dx/prof/role/vocabulary" } + }, + { + "@id": "#vocabulary-geosparql", + "@type": "ResourceDescriptor", + "hasArtifact": { + "@id": "http://www.opengis.net/ont/geosparql#" + }, + "hasRole": { + "@id": "http://www.w3.org/ns/dx/prof/role/vocabulary" + } } + ] } diff --git a/docs/1.2-DRAFT/ro-crate-preview.html b/docs/1.2-DRAFT/ro-crate-preview.html index e41b1444..ece36274 100644 --- a/docs/1.2-DRAFT/ro-crate-preview.html +++ b/docs/1.2-DRAFT/ro-crate-preview.html @@ -305,6 +305,12 @@ }, { "@id": "http://schema.org/Property" + }, + { + "@id": "http://www.opengis.net/ont/geosparql#Geometry" + }, + { + "@id": "http://www.opengis.net/ont/geosparql#asWKT" } ], "identifier": { @@ -354,368 +360,928 @@ { "@id": "#vocabulary-rdfs" }, + { + "@id": "#vocabulary-geosparql" + }, { "@id": "#specification" }, { "@id": "#example-rainfall" } - ] - }, - { - "@id": "https://creativecommons.org/publicdomain/zero/1.0/", - "@type": "CreativeWork", - "identifier": { - "@id": "http://spdx.org/licenses/CC0-1.0" - }, - "name": "Creative Commons Zero v1.0 Universal", - "version": "1.0" + ], + "@reverse": { + "conformsTo": [ + { + "@id": "ro-crate-metadata.json" + }, + { + "@id": "https://www.researchobject.org/ro-crate/1.2-DRAFT/examples/rainfall-1.2.0/" + } + ], + "about": [ + { + "@id": "ro-crate-metadata.json" + } + ] + } }, { - "@id": "https://orcid.org/0000-0001-8131-2150", - "@type": "Person", - "name": "Eoghan Ó Carragáin" + "@id": "http://datasciencehub.net/", + "@type": "Journal", + "issn": "2451-8492", + "name": "Data Science", + "url": "http://datasciencehub.net/", + "@reverse": { + "isPartOf": [ + { + "@id": "https://doi.org/10.3233/DS-210053" + } + ] + } }, { - "@id": "https://orcid.org/0000-0002-3545-944X", - "@type": "Person", - "name": "Peter Sefton" + "@id": "http://pcdm.org/models#", + "@type": "DefinedTermSet", + "name": "Portland Common Data Model", + "sameAs": "https://pcdm.org/2016/04/18/models", + "version": "2016/04/18", + "@reverse": { + "inDefinedTermSet": [ + { + "@id": "http://pcdm.org/models#Collection" + }, + { + "@id": "http://pcdm.org/models#File" + }, + { + "@id": "http://pcdm.org/models#Object" + }, + { + "@id": "http://pcdm.org/models#hasFile" + }, + { + "@id": "http://pcdm.org/models#hasMember" + } + ] + } }, { - "@id": "https://orcid.org/0000-0001-9842-9718", - "@type": "Person", - "name": "Stian Soiland-Reyes" + "@id": "http://pcdm.org/models#Collection", + "@type": [ + "DefinedTerm", + "Class" + ], + "inDefinedTermSet": { + "@id": "http://pcdm.org/models#" + }, + "name": "Repository collection", + "termCode": "RepositoryCollection", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0002-9260-0753", - "@type": "Person", - "name": "Oscar Corcho" + "@id": "http://pcdm.org/models#File", + "@type": [ + "DefinedTerm", + "Class" + ], + "inDefinedTermSet": { + "@id": "http://pcdm.org/models#" + }, + "name": "Repository file", + "termCode": "RepositoryFile", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0003-0454-7145", - "@type": "Person", - "name": "Daniel Garijo" + "@id": "http://pcdm.org/models#Object", + "@type": [ + "DefinedTerm", + "Class" + ], + "inDefinedTermSet": { + "@id": "http://pcdm.org/models#" + }, + "name": "Repository object", + "termCode": "RepositoryObject", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0003-4289-4922", - "@type": "Person", - "name": "Raul Palma" + "@id": "http://pcdm.org/models#hasFile", + "@type": [ + "DefinedTerm", + "Property" + ], + "inDefinedTermSet": { + "@id": "http://pcdm.org/models#" + }, + "name": "has file", + "termCode": "hasFile", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0001-6565-5145", - "@type": "Person", - "name": "Frederik Coppens" + "@id": "http://pcdm.org/models#hasMember", + "@type": [ + "DefinedTerm", + "Property" + ], + "inDefinedTermSet": { + "@id": "http://pcdm.org/models#" + }, + "name": "has member", + "termCode": "hasMember", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0003-1219-2137", - "@type": "Person", - "name": "Carole Goble" + "@id": "http://purl.org/vocab/vann/preferredNamespacePrefix", + "@type": "DefinedTerm", + "name": "preferred namespace prefix", + "description": "The preferred namespace prefix to use when using terms from this vocabulary in an document.", + "url": "https://vocab.org/vann/#preferredNamespacePrefix" }, { - "@id": "https://orcid.org/0000-0002-4806-5140", - "@type": "Person", - "name": "José María Fernández" + "@id": "http://purl.org/vocab/vann/preferredNamespaceUri", + "@type": "DefinedTerm", + "name": "preferred namespace URI", + "description": "The preferred namespace URI to use when using terms from this vocabulary in an document", + "url": "https://vocab.org/vann/#preferredNamespaceUri" }, { - "@id": "https://orcid.org/0000-0002-7370-4805", - "@type": "Person", - "name": "Kyle Chard" + "@id": "http://schema.org/version/15.0/", + "@type": [ + "DefinedTermSet", + "Standard" + ], + "name": "Schema.org vocabulary (http prefix)", + "encoding": { + "@id": "https://schema.org/version/15.0/schemaorg-current-http.jsonld" + }, + "vann:preferredNamespaceUri": "http://schema.org/", + "version": "15.0", + "url": "https://schema.org/docs/developers.html", + "@reverse": { + "isProfileOf": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ], + "inDefinedTermSet": [ + { + "@id": "http://schema.org/Class" + }, + { + "@id": "http://schema.org/Property" + } + ], + "isBasedOn": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT/context" + } + ], + "hasArtifact": [ + { + "@id": "#vocabulary-schema" + } + ] + } }, { - "@id": "https://orcid.org/0000-0002-5491-6431", - "@type": "Person", - "name": "Jose Manuel Gomez-Perez" + "@id": "https://schema.org/version/15.0/schemaorg-current-http.jsonld", + "@type": "CreativeWork", + "encodingFormat": "application/ld+json", + "conformsTo": { + "@id": "https://www.w3.org/TR/rdf-schema/" + }, + "@reverse": { + "encoding": [ + { + "@id": "http://schema.org/version/15.0/" + } + ] + } }, { - "@id": "https://orcid.org/0000-0002-2961-9670", - "@type": "Person", - "name": "Michael R Crusoe" + "@id": "http://www.iana.org/assignments/relation/cite-as", + "@type": [ + "DefinedTerm", + "Property" + ], + "inDefinedTermSet": { + "@id": "https://www.iana.org/assignments/link-relations/" + }, + "name": "Cite as", + "termCode": "cite-as", + "url": "https://doi.org/10.17487/RFC8574", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0002-6190-122X", - "@type": "Person", - "name": "Ignacio Eguinoa" + "@id": "https://www.w3.org/TR/rdf-schema/", + "@type": "Standard", + "name": "RDF Schema (rdfs)", + "hasPart": { + "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#" + }, + "@reverse": { + "conformsTo": [ + { + "@id": "https://schema.org/version/15.0/schemaorg-current-http.jsonld" + } + ] + } }, { - "@id": "https://orcid.org/0000-0002-2036-8350", - "@type": "Person", - "name": "Nick Juty" + "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", + "@type": "DefinedTermSet", + "url": "https://www.w3.org/TR/rdf-schema/", + "vann:preferredNamespacePrefix": "rdfs", + "vann:preferredNamespaceUri": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", + "@reverse": { + "hasPart": [ + { + "@id": "https://www.w3.org/TR/rdf-schema/" + } + ], + "inDefinedTermSet": [ + { + "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Class" + }, + { + "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property" + } + ], + "hasArtifact": [ + { + "@id": "#vocabulary-rdfs" + } + ] + } }, { - "@id": "https://orcid.org/0000-0001-8420-5254", - "@type": "Person", - "name": "Kristi Holmes" + "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Class", + "@type": [ + "DefinedTerm", + "Class" + ], + "inDefinedTermSet": { + "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#" + }, + "name": "Class (rdfs)", + "description": "Class definition as part of a Profile Crate", + "url": "https://www.w3.org/TR/rdf-schema/#ch_class", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0002-3588-6257", - "@type": "Person", - "name": "Jason A. Clark" + "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "@type": [ + "DefinedTerm", + "Class" + ], + "inDefinedTermSet": { + "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#" + }, + "name": "Property (rdfs)", + "description": "Property definition as part of a Profile Crate", + "url": "https://www.w3.org/TR/rdf-schema/#ch_property", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0002-0309-604X", - "@type": "Person", - "name": "Salvador Capella-Gutierrez" + "@id": "http://schema.org/Class", + "@type": [ + "DefinedTerm", + "Class" + ], + "inDefinedTermSet": { + "@id": "http://schema.org/version/15.0/" + }, + "name": "Class (schema.org)", + "description": "Class reference, defined outside the Profile Crate as indicated by @id url or inDefinedTermSet", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0002-5711-4872", - "@type": "Person", - "name": "Alasdair J. G. Gray" + "@id": "http://schema.org/Property", + "@type": [ + "DefinedTerm", + "Class" + ], + "inDefinedTermSet": { + "@id": "http://schema.org/version/15.0/" + }, + "name": "Property (schema.org)", + "description": "Property reference, defined outside the Profile Crate as indicated by @id url or inDefinedTermSet", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0003-2130-0865", - "@type": "Person", - "name": "Stuart Owen" + "@id": "http://www.w3.org/ns/dx/prof", + "@type": "DefinedTermSet", + "name": "Profiles Vocabulary", + "sameAs": "http://www.w3.org/ns/dx/prof/1.0", + "url": "https://www.w3.org/TR/2019/NOTE-dx-prof-20191218/", + "version": "1.0", + "@reverse": { + "inDefinedTermSet": [ + { + "@id": "http://www.w3.org/ns/dx/prof#Profile" + }, + { + "@id": "http://www.w3.org/ns/dx/prof#ResourceDescriptor" + }, + { + "@id": "http://www.w3.org/ns/dx/prof#ResourceRole" + }, + { + "@id": "http://www.w3.org/ns/dx/prof#hasArtifact" + }, + { + "@id": "http://www.w3.org/ns/dx/prof#hasResource" + }, + { + "@id": "http://www.w3.org/ns/dx/prof#hasRole" + } + ], + "hasArtifact": [ + { + "@id": "#vocabulary-prof" + } + ] + } }, { - "@id": "https://orcid.org/0000-0003-3156-2105", - "@type": "Person", - "name": "Alan R Williams" + "@id": "http://www.w3.org/ns/dx/prof#Profile", + "@type": [ + "DefinedTerm", + "Class" + ], + "inDefinedTermSet": { + "@id": "http://www.w3.org/ns/dx/prof" + }, + "name": "Profile", + "sameAs": "https://www.w3.org/TR/2019/NOTE-dx-prof-20191218/#Class:Profile", + "termCode": "Profile", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0003-1130-2154", - "@type": "Person", - "name": "Giacomo Tartari" + "@id": "http://www.w3.org/ns/dx/prof#ResourceDescriptor", + "@type": [ + "DefinedTerm", + "Class" + ], + "inDefinedTermSet": { + "@id": "http://www.w3.org/ns/dx/prof" + }, + "name": "Resource descriptor", + "sameAs": "https://www.w3.org/TR/2019/NOTE-dx-prof-20191218/#Class:ResourceDescriptor", + "termCode": "ResourceDescriptor", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0002-0048-3300", - "@type": "Person", - "name": "Finn Bacall" + "@id": "http://www.w3.org/ns/dx/prof#ResourceRole", + "@type": [ + "DefinedTerm", + "Class" + ], + "inDefinedTermSet": { + "@id": "http://www.w3.org/ns/dx/prof" + }, + "name": "Resource role", + "sameAs": "https://www.w3.org/TR/2019/NOTE-dx-prof-20191218/#Class:ResourceRole", + "termCode": "ResourceRole", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0002-1756-2128", - "@type": "Person", - "name": "Thomas Thelen" - }, - { - "@id": "https://orcid.org/0000-0002-7552-1009", - "@type": "Person", - "name": "Hervé Ménager" - }, - { - "@id": "https://orcid.org/0000-0003-4929-1219", - "@type": "Person", - "name": "Laura Rodríguez-Navas" - }, - { - "@id": "https://orcid.org/0000-0003-1541-5631", - "@type": "Person", - "name": "Paul Walk" - }, - { - "@id": "https://orcid.org/0000-0002-0337-8610", - "@type": "Person", - "name": "brandon whitehead" + "@id": "http://www.w3.org/ns/dx/prof#hasArtifact", + "@type": [ + "DefinedTerm", + "Property" + ], + "inDefinedTermSet": { + "@id": "http://www.w3.org/ns/dx/prof" + }, + "name": "has artifact", + "sameAs": "https://www.w3.org/TR/2019/NOTE-dx-prof-20191218/#Property:hasArtifact", + "termCode": "hasArtifact", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0001-6960-357X", - "@type": "Person", - "name": "Mark Wilkinson" + "@id": "http://www.w3.org/ns/dx/prof#hasResource", + "@type": [ + "DefinedTerm", + "Property" + ], + "inDefinedTermSet": { + "@id": "http://www.w3.org/ns/dx/prof" + }, + "name": "has resource", + "sameAs": "https://www.w3.org/TR/2019/NOTE-dx-prof-20191218/#Property:hasResource", + "termCode": "hasResource", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0003-0183-6910", - "@type": "Person", - "name": "Paul Groth" + "@id": "http://www.w3.org/ns/dx/prof#hasRole", + "@type": [ + "DefinedTerm", + "Property" + ], + "inDefinedTermSet": { + "@id": "http://www.w3.org/ns/dx/prof" + }, + "name": "has role", + "sameAs": "https://www.w3.org/TR/2019/NOTE-dx-prof-20191218/#Property:hasRole", + "termCode": "hasRole", + "@reverse": { + "hasPart": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } }, { - "@id": "https://orcid.org/0000-0003-0223-1059", - "@type": "Person", - "name": "Erich Bremer" + "@id": "http://www.w3.org/ns/dx/prof#role/", + "@type": "DefinedTermSet", + "hasDefinedTerm": [ + { + "@id": "http://www.w3.org/ns/dx/prof/role/constraints" + }, + { + "@id": "http://www.w3.org/ns/dx/prof/role/example" + }, + { + "@id": "http://www.w3.org/ns/dx/prof/role/guidance" + }, + { + "@id": "http://www.w3.org/ns/dx/prof/role/mapping" + }, + { + "@id": "http://www.w3.org/ns/dx/prof/role/schema" + }, + { + "@id": "http://www.w3.org/ns/dx/prof/role/specification" + }, + { + "@id": "http://www.w3.org/ns/dx/prof/role/validation" + }, + { + "@id": "http://www.w3.org/ns/dx/prof/role/vocabulary" + } + ], + "name": "Resource Roles vocabulary", + "url": "https://www.w3.org/TR/2019/NOTE-dx-prof-20191218/#resource-roles-vocab" }, { - 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"http://www.w3.org/ns/dx/prof/role/vocabulary" + }, + "@reverse": { + "hasResource": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } + }, + { + "@id": "#vocabulary-rdfs", + "@type": "ResourceDescriptor", + "hasArtifact": { + "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#" + }, + "hasRole": { + "@id": "http://www.w3.org/ns/dx/prof/role/vocabulary" + }, + "@reverse": { + "hasResource": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } + }, + { + "@id": "#vocabulary-geosparql", + "@type": "ResourceDescriptor", + "hasArtifact": { + "@id": "http://www.opengis.net/ont/geosparql#" + }, + "hasRole": { + "@id": "http://www.w3.org/ns/dx/prof/role/vocabulary" + }, + "@reverse": { + "hasResource": [ + { + "@id": "https://w3id.org/ro/crate/1.2-DRAFT" + } + ] + } } ] } @@ -1972,7 +3831,7 @@ - + @@ -2255,6 +4114,10 @@

Go to: RO-Crate specifica
  • Class (schema.org)
  • Property (schema.org)
    • + +
  • Geometry
    • + +
  • Geometry
    • identifier [?] @@ -2296,6 +4159,8 @@

    Go to: RO-Crate specifica
  • #vocabulary-rdfs
    • +
  • #vocabulary-geosparql
    • +
  • #specification
  • #example-rainfall
    • @@ -5530,6 +7395,87 @@

    Go to: Property (schema.org)

    + +


    +
    +

    Go to: Geometry

    + + + + +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    @idhttp://www.opengis.net/ont/geosparql#Geometry
    name [?]Geometry
    @typeDefinedTerm
    description [?]A coherent set of direct positions in space. The positions are held within a Spatial Reference System (SRS).
    termCode [?]Geometry
    sameAs [?]https://opengeospatial.github.io/ogc-geosparql/geosparql11/#Geometry
    inDefinedTermSet [?]GeoSPARQL ontology
    Items that reference this one
    hasPart [?]RO-Crate specification 1.2
    +
    + +
    +


    +
    +

    Go to: Geometry

    + + + + +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    @idhttp://www.opengis.net/ont/geosparql#asWKT
    name [?]Geometry
    @typeDefinedTerm
    description [?]The WKT (Well-Known Text) serialization (ISO13249) of a Geometry.
    termCode [?]asWKT
    citation [?]OpenGIS Implementation Specification for Geographic information – Simple feature access – Part 1: Common architecture
    sameAs [?]https://opengeospatial.github.io/ogc-geosparql/geosparql11/#asWKT
    inDefinedTermSet [?]GeoSPARQL ontology
    Items that reference this one
    hasPart [?]RO-Crate specification 1.2
    +
    +


    @@ -5701,7 +7647,7 @@

    Go to: Schema.org vocabulary encoding [?] https://schema.org/version/15.0/schemaorg-current-http.jsonld - vann:preferredNamespaceUri [?] + vann:preferredNamespaceUri http://schema.org/ version [?] @@ -6147,6 +8093,36 @@

    #vocabulary-rdfs

    + +


    +
    +

    #vocabulary-geosparql

    + + + + +
    + + + + + + + + + + + + + + + + + + +
    @id#vocabulary-geosparql
    @typeResourceDescriptor
    hasArtifact [?]GeoSPARQL ontology
    hasRole [?]Vocabulary
    Items that reference this one
    hasResource [?]RO-Crate specification 1.2
    +
    +


    diff --git a/docs/_includes/references.liquid b/docs/_includes/references.liquid index 4eaee3f8..e629b3bb 100644 --- a/docs/_includes/references.liquid +++ b/docs/_includes/references.liquid @@ -101,6 +101,7 @@ and is also rendered into the end of the PDF. [IANA link relations]: https://www.iana.org/assignments/link-relations/ [RFC8574]: https://www.iana.org/go/rfc8574 [citation styles]: https://citationstyles.org/ +[GeoSPARQL ontology]: https://opengeospatial.github.io/ogc-geosparql/geosparql11/ [Action]: http://schema.org/Action [ActionStatusType]: http://schema.org/ActionStatusType @@ -132,6 +133,8 @@ and is also rendered into the end of the PDF. [Thing]: http://schema.org/Thing [UpdateAction]: http://schema.org/UpdateAction [WebSite]: http://schema.org/WebSite +[Geometry]: https://opengeospatial.github.io/ogc-geosparql/geosparql11/#Geometry +[asWKT]: https://opengeospatial.github.io/ogc-geosparql/geosparql11/#asWKT [about]: http://schema.org/about [accountablePerson]: http://schema.org/accountablePerson diff --git a/docs/community.md b/docs/community.md index 7fce5038..c6fa7818 100644 --- a/docs/community.md +++ b/docs/community.md @@ -19,9 +19,11 @@ title: Community --> # RO-Crate Community + {: .no_toc } ## Table of contents + {: .no_toc .text-delta } 1. TOC @@ -103,8 +105,12 @@ The _RO-Crate_ team is: * Martin Weise * Vartika Bisht * Toshiyuki Nishiyama Hiraki +* Bram Ulrichts +* Michael Falk +* Eli Chadwick + -The RO-Crate Community is open for anyone to [join us](https://github.com/ResearchObject/ro-crate/issues/1)! +The RO-Crate Community is open for anyone to [join us](https://github.com/ResearchObject/ro-crate/issues/1)! ## Meetings @@ -114,7 +120,7 @@ See also [recent and upcoming events](outreach#upcoming-and-recent-events). ## Mailing list -The RO-Crate Community has a low-traffic public [RO-Crate mailing list](https://lists.elixir-europe.org/mailman/listinfo/ro-crate_elixir-europe.org), used for announcements and general enquiries. +The RO-Crate Community has a low-traffic public [RO-Crate mailing list](https://lists.elixir-europe.org/mailman/listinfo/ro-crate_elixir-europe.org), used for announcements and general enquiries. Note that most discussion about the [RO-Crate specifications](specification.md) typically happen in [GitHub issues](https://github.com/ResearchObject/ro-crate/issues) and [community meetings](https://s.apache.org/ro-crate-minutes). @@ -126,14 +132,12 @@ We have an informal Slack chat channel [#ro-crate on seek4science.slack.com](htt Contributors to the RO-Crate community are expected to comply with our [Code of Conduct](https://github.com/ResearchObject/ro-crate/blob/master/CODE_OF_CONDUCT.md) to ensure an open and inclusive environment. - ## Contributing To suggest changes, improvements or issues, use the GitHub repository - if you are new to GitHub or Open Source you may appreciate the [GitHub guides](https://guides.github.com/) like [Hello World](https://guides.github.com/activities/hello-world/), [MarkDown](https://guides.github.com/features/mastering-markdown/) and [How to contribute to open source](https://opensource.guide/how-to-contribute/) -You are welcome to [join us](https://github.com/ResearchObject/ro-crate/issues/1)! +You are welcome to [join us](https://github.com/ResearchObject/ro-crate/issues/1)! ## Open Source This specification and documentation is Open Source and licensed as [Apache License, version 2.0](https://github.com/ResearchObject/ro-crate/blob/master/LICENSE), see for details. - diff --git a/docs/outreach.md b/docs/outreach.md index f6b10c29..21b43814 100644 --- a/docs/outreach.md +++ b/docs/outreach.md @@ -21,11 +21,6 @@ title: Outreach and Publications # RO-Crate Outreach and Publications {: .no_toc } -{: .tip} -> **Upcoming tutorial**: _Improving FAIRability of your research outcomes with RO-Crates, SignPosting and Bioschemas_ -> At [Semantic Web Applications and Tools for Health Care and Life Sciences](https://www.swat4ls.org/workshops/leiden2024/) (SWAT4HCLS), 2024-02-26/--29, Leiden, The Netherlands. -> [[Register](https://www.swat4ls.org/workshops/leiden2024/registration/) (by 12 February 2024) - ## Table of contents {: .no_toc .text-delta } diff --git a/docs/tutorials.md b/docs/tutorials.md index 2d205365..f0eab918 100644 --- a/docs/tutorials.md +++ b/docs/tutorials.md @@ -19,13 +19,14 @@ title: Tutorials --> # RO-Crate tutorials + {: .no_toc } -* [Galaxy Smörgåsbord 2023](https://gallantries.github.io/video-library/events/smorgasbord3/): module [FAIR data and provenance with RO-Crate and Galaxy](https://gallantries.github.io/video-library/modules/ro-crate): - - [An overview of the RO-Crate concept and its implementations](https://gallantries.github.io/video-library/videos/ro-crates/intro/slides): [[video](https://www.youtube.com/watch?v=5GYdN5B1tc8)] (17 min), [[slides/transcripts](https://doi.org/10.5281/zenodo.7828632)] - - [RO-Crate - Introduction](https://training.galaxyproject.org/topics/fair/tutorials/ro-crate-intro/tutorial.html) - - [RO-Crate in Python](https://training.galaxyproject.org/topics/fair/tutorials/ro-crate-in-python/tutorial.html) - - [Workflow Run RO-Crate introduction](https://training.galaxyproject.org/topics/fair/tutorials/ro-crate-workflow-run-ro-crate/tutorial.html) - +* The Carpentries-style tutorial [Packaging Data with RO-Crate](https://www.researchobject.org/packaging_data_with_ro-crate/) guides you through constructing a simple RO-Crate. +* The [Galaxy Smörgåsbord 2023](https://gallantries.github.io/video-library/events/smorgasbord3/) module [FAIR data and provenance with RO-Crate and Galaxy](https://gallantries.github.io/video-library/modules/ro-crate) has further learning material: + * [An overview of the RO-Crate concept and its implementations](https://gallantries.github.io/video-library/videos/ro-crates/intro/slides): [[video](https://www.youtube.com/watch?v=5GYdN5B1tc8)] (17 min), [[slides/transcripts](https://doi.org/10.5281/zenodo.7828632)] + * [RO-Crate - Introduction](https://training.galaxyproject.org/topics/fair/tutorials/ro-crate-intro/tutorial.html): guides you through constructing a simple RO-Crate, similar to the Carpentries-style tutorial above + * [RO-Crate in Python](https://training.galaxyproject.org/topics/fair/tutorials/ro-crate-in-python/tutorial.html): introduces the [`rocrate`](https://github.com/ResearchObject/ro-crate-py) Python package which can be used to construct, edit, and read RO-Crates + * [Workflow Run RO-Crate introduction](https://training.galaxyproject.org/topics/fair/tutorials/ro-crate-workflow-run-ro-crate/tutorial.html): guides you through constructing an RO-Crate which captures an execution of a computational workflow. diff --git a/scripts/schema-context.py b/scripts/schema-context.py index 5b888881..9061da9b 100755 --- a/scripts/schema-context.py +++ b/scripts/schema-context.py @@ -154,6 +154,7 @@ def main(): ## from DC Terms, used in profiles and metadata file ("conformsTo", "http://purl.org/dc/terms/conformsTo"), ("Standard", "http://purl.org/dc/terms/Standard"), + ## ## The Profiles Vocabulary # https://www.w3.org/TR/2019/NOTE-dx-prof-20191218/ @@ -167,6 +168,11 @@ def main(): ("Profile", "http://www.w3.org/ns/dx/prof/Profile"), ## END + ## GeoSparql terms + ("Geometry", "http://www.opengis.net/ont/geosparql#Geometry"), + ("asWKT", "http://www.opengis.net/ont/geosparql#asWKT"), + ## END + ## FIXME: Where is this used from? ("@label", "http://www.w3.org/2000/01/rdf-schema#label"), @@ -193,6 +199,7 @@ def main(): ("relation", "http://www.iana.org/assignments/relation/"), ("wf4ever", "http://purl.org/ro/wf4ever#"), ("vann", "http://purl.org/vocab/vann/"), + ("geosparql", "http://www.opengis.net/ont/geosparql#"), # Disabled, see https://github.com/ResearchObject/ro-crate/pull/73 # ("@base", None) ])