.travis.yml

os:
    - linux

language: cpp

compiler:
    - gcc

cache:
  apt: true

addons:
  apt:
    sources:
    - ubuntu-toolchain-r-test
    packages:
    - gcc-4.9
    - g++-4.9
    - doxygen


before_install:
    - wget http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
    - chmod +x miniconda.sh
    - "./miniconda.sh -b"
    - export CONDA_PATH=$HOME/miniconda3
    - export PATH=$CONDA_PATH/bin:$PATH
    - conda update --yes conda
    - conda install --yes automake pkgconfig viennarna boost -c conda-forge -c bioconda
    #    - export CONDA_PATH=/home/travis/miniconda2/
    - export CONDA_LIB_PATH=$CONDA_PATH/lib
    #    - ls $CONDA_LIB_PATH
    #    - ls $CONDA_PATH/include
    - export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CONDA_LIB_PATH

script:
    - RNAalifold --version
    ##### start IntaRNA build #####
    - cd $TRAVIS_BUILD_DIR 
    # generate autotools's files 
    - bash autotools-init.sh 
    - CC=gcc-4.9 CXX=g++-4.9 ./configure --with-boost=$CONDA_PATH --with-vrna=$CONDA_PATH --prefix=$HOME/IntaRNA
    # compile, test and install IntaRNA
    - make && make tests && make install
    ##### check IntaRNA build #####
    # run IntaRNA with help output
    - $HOME/IntaRNA/bin/IntaRNA -h