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Update the scatter_scores.R file #2

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mdsage1 opened this issue Aug 29, 2023 · 1 comment
Open
1 of 4 tasks

Update the scatter_scores.R file #2

mdsage1 opened this issue Aug 29, 2023 · 1 comment

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@mdsage1
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mdsage1 commented Aug 29, 2023

Scatter_scores.R is configured to handle the old challenge.

  • Update output filename to match the RARE-X challenge, i.e. all_gene_scores_sc1.pdf should be changed to a more fitting name
  • Confirm that scatter plot is relevant to current challenge specifications
  • Determine what the following variables represent:
    baseline_magic <- "9732066"
    baseline_deepimpute <- "9732074"
  • Determine what old code is plotting the gene scores against
@mdsage1
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mdsage1 commented Aug 29, 2023

baseline_magic <- "9732066" is the baseline model submitted to the eval queue during a dry run. Still need to determine whether RARE-X requires a deepimpute model.

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