cloudbuild.yaml

# Copyright 2017 Google Inc.
#
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# Builds three docker images for DeepVariant:
# 1) DeepVariant binaries for CPU usage.
# 2) DeepVariant binaries for GPU usage.
# 3) A runner binary for running DeepVariant at scale using the
#    Google Cloud Platform via the Genomics Pipelines API.
# Run using:
# $ gcloud builds submit --config cloudbuild.yaml --timeout 3h .
steps:
  - name: 'ubuntu:16.04'
    args: ['bash', './deepvariant/docker/build_docker_bins.sh']
  - name: 'gcr.io/cloud-builders/docker'
    args:
      - 'build'
      - '--tag=gcr.io/$PROJECT_ID/deepvariant:$TAG_NAME'
      - '.'
    id: 'cpu'
    dir: 'deepvariant/docker'
  - name: 'gcr.io/cloud-builders/docker'
    args:
      - 'build'
      - '--tag=gcr.io/$PROJECT_ID/deepvariant_gpu:$TAG_NAME'
      - '--build-arg=FROM_IMAGE=nvidia/cuda:9.0-cudnn7-devel-ubuntu16.04'
      - '--build-arg=DV_GPU_BUILD=1'
      - '.'
    id: 'gpu'
    dir: 'deepvariant/docker'
  - name: 'gcr.io/cloud-builders/docker'
    args:
      - 'build'
      - '--tag=gcr.io/$PROJECT_ID/deepvariant_runner:$TAG_NAME'
      - '--file=Dockerfile.runner'
      - '.'
    id: 'runner'
    dir: 'deepvariant/docker'
images:
  - 'gcr.io/$PROJECT_ID/deepvariant:$TAG_NAME'
  - 'gcr.io/$PROJECT_ID/deepvariant_gpu:$TAG_NAME'
  - 'gcr.io/$PROJECT_ID/deepvariant_runner:$TAG_NAME'