diff --git a/inst/NEWS.Rd b/inst/NEWS.Rd index 0448dd7..a91c3fb 100644 --- a/inst/NEWS.Rd +++ b/inst/NEWS.Rd @@ -11,6 +11,18 @@ This should be faster than the previous \pkg{BiocSingular} and \code{stats::kmea \item Added a \code{configureMarkerHeatmap()} function to perform all the calculations used by \code{plotMarkerHeatmap()}. This allows users to re-use the calculations with a custom visualization for the expression values. + +\item Automatically remove duplicated gene names in \code{trainSingleR()}. +This avoids matching to the wrong gene after identifying markers from the reference dataset. + +\item Report scores as a DataFrame of nested Dataframes in \code{combineRecomputedResults()}. +Each inner DataFrame corresponds to a reference and contains the identity of the best label and the recomputed score in that reference. +This is simpler and more efficient than the previous "expanded with NA" format. + +\item Report the deltas (i.e., difference between the best and next-best scores) in \code{combineRecomputedResults()}. + +\item Separate the missingness check arguments in \code{SingleR()} with the new \code{check.missing.test=} and \code{check.missing.ref=} options. +The former is disabled by default, to avoid an unnecessary missingness check in the vast majority of test cases. }} \section{Version 2.8.0}{\itemize{