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Because it is such a pain, we might as well offer to convert P-values into corresponding T/F statistics based on nominal degrees of freedom when the Pseudo-t statistic is used. Variance smoothing messes up the DF, and hence these statistics won't have the exact same interpretation as usual... however, there is no known mapping between uncorrected P-values and pseudo-t values, and hence it leaves users in a muddle.
In FSL's randomise, we don't worry about this.
We should change our behavior, and provide the P-to-T/F service for users, simply issuing a warning that the conversion is approximate due to unknown effective degrees of freedom.
Because it is such a pain, we might as well offer to convert P-values into corresponding T/F statistics based on nominal degrees of freedom when the Pseudo-t statistic is used. Variance smoothing messes up the DF, and hence these statistics won't have the exact same interpretation as usual... however, there is no known mapping between uncorrected P-values and pseudo-t values, and hence it leaves users in a muddle.
In FSL's randomise, we don't worry about this.
We should change our behavior, and provide the P-to-T/F service for users, simply issuing a warning that the conversion is approximate due to unknown effective degrees of freedom.
Relevant code starts here: https://github.com/nicholst/SnPM-devel/blob/master/snpm_pp.m#L518
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