KOMP_reporting.xml

<tool id="KOMP_reporting" name="KOMP PFS Reporting" version="0.0.1">
    <description>Pull reports from KOMP PFS Core</description>
    <command interpreter="/projects/galaxy/tools/cba/p3env/bin/python">
    KOMP_reporting.py  -r $komp_request -b $komp_batch -e $experiment -f $from_test_date -t $to_test_date -o $options -j $line -u $__user_email__ > $out_file1
    </command>


<code file="komp_form.py" />
 <inputs>
    <param format="txt" name="komp_request" multiple="true" value="" type="select" label="KOMP Request" dynamic_options="get_request_fields()"/>
    <param format="txt" name="komp_batch" multiple="true" value="" type="select" label="KOMP Batch" dynamic_options="get_batch_fields()" />
    <param format="txt" name="experiment" multiple="true" type="select" value=""  label="Experiment" dynamic_options="get_experiment_fields()" />
    <param format="txt" name="line" multiple="false" type="select" value=""  label="Line" dynamic_options="get_line_fields()" />
    <param format="txt" name="from_test_date" type="text" label="From Test Date *05-29-2012" />
    <param format="txt" name="to_test_date" type="text" label="To Test Date *05-29-2020" />	
    <param name="options" type="select" label="Get" multiple="true" display="checkboxes">
		<option value="p">Published:</option>
		<option value="u">Unpublished:</option>
		<option value="s">Summary Output:</option>
		<option value="i">Include Inactive:</option>
    </param>
 </inputs>
<outputs>
    <data name="out_file1" format="xlsx" metadata_source="input1"/>
</outputs>

<help>


**What it does:**
This tool pulls KOMP reports from PFS Core.

</help>
</tool>