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environment.yml
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name: flepseq
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- binutils_impl_linux-64=2.40=hf600244_0
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.0=h5eee18b_0
- ca-certificates=2023.01.10=h06a4308_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.16.0=ha61ee94_1014
- click=8.1.3=py310hff52083_1
- curl=7.87.0=h6312ad2_0
- expat=2.5.0=hcb278e6_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=hca18f0e_1
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=12.2.0=hcc96c02_19
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=12.2.0=h55be85b_19
- graphite2=1.3.14=h295c915_1
- gsl=2.7.1=h6e86dc7_1
- gxx_impl_linux-64=12.2.0=hcc96c02_19
- h5py=3.8.0=nompi_py310ha66b2ad_101
- harfbuzz=6.0.0=h8e241bc_0
- hdf5=1.14.0=nompi_h5231ba7_103
- htslib=1.17=h6bc39ce_0
- icu=70.1=h27087fc_0
- joblib=1.2.0=pyhd8ed1ab_0
- jpeg=9e=h0b41bf4_3
- k8=0.2.5=hd03093a_2
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- krb5=1.20.1=hf9c8cef_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libaec=1.0.6=hcb278e6_1
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcurl=7.87.0=h6312ad2_0
- libdeflate=1.13=h166bdaf_0
- libedit=3.1.20221030=h5eee18b_0
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=12.2.0=h3b97bd3_19
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.74.1=h606061b_1
- libgomp=12.2.0=h65d4601_19
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- libnghttp2=1.51.0=hdcd2b5c_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.39=h753d276_0
- libsanitizer=12.2.0=h46fd767_19
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-devel_linux-64=12.2.0=h3b97bd3_19
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.4.0=h0e0dad5_3
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.0=h0b41bf4_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.10.3=hca2bb57_4
- libzlib=1.2.13=h166bdaf_4
- lz4-c=1.9.4=hcb278e6_0
- make=4.3=hd18ef5c_1
- minimap2=2.24=h7132678_1
- ncurses=6.4=h6a678d5_0
- numpy=1.24.2=py310h8deb116_0
- ont-fast5-api=4.1.1=pyhdfd78af_0
- openssl=1.1.1t=h0b41bf4_0
- packaging=23.1=pyhd8ed1ab_0
- pandas=2.0.0=py310h9b08913_0
- pandoc=2.19.2=h32600fe_2
- pango=1.50.14=hd33c08f_0
- pcre2=10.40=hc3806b6_0
- pip=23.0.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- progressbar33=2.4=py_0
- pthread-stubs=0.4=h36c2ea0_1001
- pysam=0.21.0=py310hff46b53_0
- python=3.10.8=h257c98d_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.10=3_cp310
- pytz=2023.3=pyhd8ed1ab_0
- r-askpass=1.1=r42h06615bd_3
- r-assertthat=0.2.1=r42hc72bb7e_3
- r-backports=1.4.1=r42h06615bd_1
- r-base=4.2.2=h6b4767f_2
- r-base64enc=0.1_3=r42h06615bd_1005
- r-bit=4.0.5=r42h06615bd_0
- r-bit64=4.0.5=r42h06615bd_1
- r-blob=1.2.4=r42hc72bb7e_0
- r-broom=1.0.4=r42hc72bb7e_0
- r-bslib=0.4.2=r42hc72bb7e_0
- r-cachem=1.0.7=r42h133d619_0
- r-callr=3.7.3=r42hc72bb7e_0
- r-cellranger=1.1.0=r42hc72bb7e_1005
- r-cli=3.6.1=r42h38f115c_0
- r-clipr=0.8.0=r42hc72bb7e_1
- r-colorspace=2.1_0=r42h133d619_0
- r-cpp11=0.4.3=r42hc72bb7e_0
- r-crayon=1.5.2=r42hc72bb7e_1
- r-curl=4.3.3=r42h06615bd_1
- r-data.table=1.14.8=r42h133d619_0
- r-dbi=1.1.3=r42hc72bb7e_1
- r-dbplyr=2.3.2=r42hc72bb7e_0
- r-digest=0.6.31=r42h38f115c_0
- r-dplyr=1.1.1=r42h38f115c_0
- r-dtplyr=1.3.1=r42hc72bb7e_0
- r-ellipsis=0.3.2=r42h06615bd_1
- r-evaluate=0.20=r42hc72bb7e_0
- r-fansi=1.0.4=r42h133d619_0
- r-farver=2.1.1=r42h7525677_1
- r-fastmap=1.1.1=r42h38f115c_0
- r-fontawesome=0.5.0=r42hc72bb7e_0
- r-forcats=1.0.0=r42hc72bb7e_0
- r-fs=1.6.1=r42h38f115c_0
- r-gargle=1.3.0=r42h785f33e_0
- r-generics=0.1.3=r42hc72bb7e_1
- r-getopt=1.20.3=r42ha770c72_3
- r-ggplot2=3.4.2=r42hc72bb7e_0
- r-glue=1.6.2=r42h06615bd_1
- r-googledrive=2.1.0=r42hc72bb7e_0
- r-googlesheets4=1.1.0=r42h785f33e_0
- r-gtable=0.3.3=r42hc72bb7e_0
- r-haven=2.5.2=r42h38f115c_0
- r-highr=0.10=r42hc72bb7e_0
- r-hms=1.1.3=r42hc72bb7e_0
- r-htmltools=0.5.5=r42h38f115c_0
- r-httr=1.4.5=r42hc72bb7e_0
- r-ids=1.0.1=r42hc72bb7e_2
- r-isoband=0.2.7=r42h38f115c_1
- r-jquerylib=0.1.4=r42hc72bb7e_1
- r-jsonlite=1.8.4=r42h133d619_0
- r-knitr=1.42=r42hc72bb7e_1
- r-labeling=0.4.2=r42hc72bb7e_2
- r-lattice=0.21_8=r42h133d619_0
- r-lifecycle=1.0.3=r42hc72bb7e_1
- r-lubridate=1.9.2=r42h133d619_1
- r-magrittr=2.0.3=r42h06615bd_1
- r-mass=7.3_58.3=r42h133d619_0
- r-matrix=1.5_4=r42he1ae0d6_0
- r-memoise=2.0.1=r42hc72bb7e_1
- r-mgcv=1.8_42=r42he1ae0d6_0
- r-mime=0.12=r42h06615bd_1
- r-modelr=0.1.11=r42hc72bb7e_0
- r-munsell=0.5.0=r42hc72bb7e_1005
- r-nlme=3.1_162=r42hac0b197_0
- r-openssl=2.0.5=r42hb1dc35e_0
- r-optparse=1.7.3=r42hc72bb7e_1
- r-pillar=1.9.0=r42hc72bb7e_0
- r-pkgconfig=2.0.3=r42hc72bb7e_2
- r-prettyunits=1.1.1=r42hc72bb7e_2
- r-processx=3.8.0=r42h06615bd_0
- r-progress=1.2.2=r42hc72bb7e_3
- r-ps=1.7.4=r42h133d619_0
- r-purrr=1.0.1=r42h133d619_0
- r-r6=2.5.1=r42hc72bb7e_1
- r-rappdirs=0.3.3=r42h06615bd_1
- r-rcolorbrewer=1.1_3=r42h785f33e_1
- r-rcpp=1.0.10=r42h38f115c_0
- r-readr=2.1.4=r42h38f115c_0
- r-readxl=1.4.2=r42h81ef4d7_0
- r-rematch=1.0.1=r42hc72bb7e_1005
- r-rematch2=2.1.2=r42hc72bb7e_2
- r-reprex=2.0.2=r42hc72bb7e_1
- r-rlang=1.1.0=r42h38f115c_0
- r-rmarkdown=2.21=r42hc72bb7e_0
- r-rstudioapi=0.14=r42hc72bb7e_1
- r-rvest=1.0.3=r42hc72bb7e_1
- r-sass=0.4.5=r42h38f115c_0
- r-scales=1.2.1=r42hc72bb7e_1
- r-selectr=0.4_2=r42hc72bb7e_2
- r-stringi=1.7.12=r42h1ae9187_0
- r-stringr=1.5.0=r42h785f33e_0
- r-sys=3.4.1=r42h06615bd_0
- r-tibble=3.2.1=r42h133d619_1
- r-tidyr=1.3.0=r42h38f115c_0
- r-tidyselect=1.2.0=r42hc72bb7e_0
- r-tidyverse=1.3.2=r42hc72bb7e_1
- r-timechange=0.2.0=r42h38f115c_0
- r-tinytex=0.44=r42hc72bb7e_0
- r-tzdb=0.3.0=r42h7525677_1
- r-utf8=1.2.3=r42h133d619_0
- r-uuid=1.1_0=r42h06615bd_1
- r-vctrs=0.6.1=r42h38f115c_0
- r-viridislite=0.4.1=r42hc72bb7e_1
- r-vroom=1.6.1=r42h38f115c_0
- r-withr=2.5.0=r42hc72bb7e_1
- r-xfun=0.38=r42h38f115c_0
- r-xml2=1.3.3=r42h044e5c7_2
- r-yaml=2.3.7=r42h133d619_0
- readline=8.2=h8228510_1
- samtools=1.17=h00cdaf9_0
- sed=4.8=he412f7d_0
- setuptools=67.6.1=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- sysroot_linux-64=2.12=he073ed8_15
- tar=1.34=hb2e2bae_1
- tk=8.6.12=h27826a3_0
- tktable=2.10=hb7b940f_3
- tzdata=2023c=h71feb2d_0
- wheel=0.40.0=pyhd8ed1ab_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.8.4=h0b41bf4_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.10=h5eee18b_1
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.5=hc292b87_0
prefix: /work/bio-mowp/anaconda3/envs/flepseq