biologicals.ttl

@prefix xrr: <http://i3s.unice.fr/xr2rml#> .
@prefix rr:  <http://www.w3.org/ns/r2rml#> .
@prefix rml: <http://semweb.mmlab.be/ns/rml#> .
@prefix rdfs:   <http://www.w3.org/2000/01/rdf-schema#> .
@prefix rdf:    <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix owl:    <http://www.w3.org/2002/07/owl#> .
@prefix xsd:    <http://www.w3.org/2001/XMLSchema#> .

@prefix ppeo: <http://purl.org/ppeo/PPEO.owl#> .

<#BM>
	a rr:TripleMap;
	xrr:logicalSource [
		xrr:query """db.Biologicals.find()""";
	];
	
	rr:subjectMap [
		rr:template "http://www.urgi.versailles.inrae.fr/biological_material/{$.accession_name}";
		rr:class ppeo:biological_material;
	];
	
	rr:predicateObjectMap [
		rr:predicate ppeo:hasMaterialSource;
		rr:objectMap [
			rr:template "http://www.urgi.versailles.inrae.fr/material_source/sha1({$.genus}_{$.species}_{$.accession_name})";
		];
	];
	
	rr:predicateObjectMap [
		rr:predicate ppeo:hasLotName;
		rr:objectMap [
			xrr:reference "$.biological_id";
			rr:datatype xsd:string;
		];
	];
	
	rr:predicateObjectMap [
		rr:predicate ppeo:hasAccessionNumber;
		rr:objectMap [
			xrr:reference "$.accession_number";
			rr:datatype xsd:string;
		];
	];
	
	rr:predicateObjectMap [
		rr:predicate ppeo:hasAccessionName;
		rr:objectMap [
			xrr:reference "$.accession_name";
			rr:datatype xsd:string;
		];
	].

<#MS>
	a rr:TripleMap;
	xrr:logicalSource [
		xrr:query """db.Biologicals.find()""";
	];
	
	rr:subjectMap [
		rr:template "http://www.urgi.versailles.inrae.fr/material_source/sha1({$.genus}_{$.species}_{$.accession_name})";
		rr:class ppeo:material_source;
	];
	
	rr:predicateObjectMap [
		rr:predicate ppeo:hasGenus;
		rr:objectMap [
			xrr:reference "$.genus";
			rr:datatype xsd:string;
		];
	];
	
	rr:predicateObjectMap [
		rr:predicate ppeo:hasDOI;
		rr:objectMap [
			xrr:reference "$.material_source_doi";
			rr:datatype xsd:string;
		];
	];
	
	rr:predicateObjectMap [
		rr:predicate ppeo:hasSubtaxon;
		rr:objectMap [
			xrr:reference "$.subspecies";
			rr:datatype xsd:string;
		];
	];
	
	rr:predicateObjectMap [
		rr:predicate ppeo:hasSpecies;
		rr:objectMap [
			xrr:reference "$.species";
			rr:datatype xsd:string;
		];
	].