diff --git a/.github/workflows/dev-tests.yml b/.github/workflows/dev-tests.yml index b46f418..64b0559 100644 --- a/.github/workflows/dev-tests.yml +++ b/.github/workflows/dev-tests.yml @@ -31,11 +31,6 @@ jobs: python-version: ${{ matrix.python-version }} activate-environment: xpresspipe - - name: Install system dependencies - run: | - sudo apt-get update - sudo apt-get install -y libssl-dev - - name: Install dependencies shell: bash -l {0} run: | @@ -43,7 +38,7 @@ jobs: conda env update --file requirements.yml --name xpresspipe conda activate xpresspipe pip install . - pip install codecov flake8 + pip install codecov - name: Run test_arguments.py shell: bash -l {0} diff --git a/requirements.yml b/requirements.yml index 2d0cf0a..3488131 100644 --- a/requirements.yml +++ b/requirements.yml @@ -13,6 +13,7 @@ dependencies: - conda-forge::numpy>=1.16.0 - conda-forge::scipy - conda-forge::r-base>=4.0.0 + - conda-forge::openssl - fastp - umi_tools - STAR>=2.5.1