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GSEA result p.adjust vs qvalue #24

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mgandal opened this issue May 25, 2018 · 0 comments
Open

GSEA result p.adjust vs qvalue #24

mgandal opened this issue May 25, 2018 · 0 comments

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@mgandal
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mgandal commented May 25, 2018

Could you clarify in the documentation for your GSEA algorithm what the difference is between p.adjust and qvalue output? Usually p.adjust is run with 'fdr' as default method which should be exactly equivalent to qvalue?
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@mgandal