diff --git a/adsingestp/parsers/jats.py b/adsingestp/parsers/jats.py
index 706d924..593033a 100644
--- a/adsingestp/parsers/jats.py
+++ b/adsingestp/parsers/jats.py
@@ -3,6 +3,7 @@
from collections import OrderedDict
from copy import copy
+import bs4
import validators
from ordered_set import OrderedSet
@@ -291,28 +292,48 @@ def parse(self, article_metadata):
else:
collab = contrib.find("collab")
- collab_affil = ""
- collab_name = collab.get_text()
- if collab.find("address"):
- collab_affil = collab.find("address").get_text()
+ # This is checking if a collaboration is listed as an author
+ if collab:
+ if type(collab.contents[0].get_text()) == str:
+ collab_name = collab.contents[0].get_text().strip()
+ else:
+ collab_name = collab.get_text().strip()
+
+ if collab.find("address"):
+ collab_affil = collab.find("address").get_text()
+ else:
+ collab_affil = []
+
+ self.collab = {
+ "collab": collab_name,
+ "aff": collab_affil,
+ "affid": [],
+ "xaff": [],
+ "xemail": [],
+ "email": [],
+ "corresp": False,
+ "rid": None,
+ "surname": "",
+ "given": "",
+ "native_lang": "",
+ "orcid": "",
+ }
- self.collab = {
- "collab": collab_name,
- "aff": collab_affil,
- "affid": [],
- "xaff": [],
- "xemail": [],
- "email": [],
- "corresp": False,
- "rid": None,
- }
if self.collab:
# add collab in the correct author position
if self.collab not in authors_out:
authors_out.append(self.collab)
# find nested collab authors and unnest them
- nested_contribs = contrib.find_all("contrib")
+ collab_contribs = collab.find_all("contrib")
+ nested_contribs = []
+ for ncontrib in collab_contribs:
+ if ncontrib:
+ nested_contribs.append(copy(ncontrib))
+ ncontrib.decompose()
+
+ if not nested_contribs:
+ nested_contribs = contrib.find_all("contrib")
nested_idx = idx + 1
for nested_contrib in nested_contribs:
@@ -334,13 +355,26 @@ def parse(self, article_metadata):
authors_out[rid_match[0]] = author_tmp
else:
# add new collab tag to each unnested author
- collabtag = copy(contrib.find("collab").find("institution"))
- nested_contrib.append(collabtag)
- contribs_raw.insert(nested_idx, nested_contrib.extract())
- nested_idx += 1
-
- continue
-
+ if contrib.find("collab") and contrib.find("collab").find(
+ "institution"
+ ):
+ collabtag = copy(contrib.find("collab").find("institution"))
+ else:
+ collabtag = None
+
+ if not collabtag and collab_name:
+ collabtag_string = "" + collab_name + ""
+ collabtag = bs4.BeautifulSoup(collabtag_string, "xml").collab
+
+ if not collabtag:
+ collabtag = "ALLAUTH"
+
+ if collabtag:
+ nested_contrib.insert(0, collabtag)
+ contribs_raw.insert(nested_idx, nested_contrib.extract())
+ nested_idx += 1
+
+ # check if collabtag is present in the author author attributes
collab = contrib.find("collab")
# Springer collab info for nested authors is given as
@@ -348,21 +382,31 @@ def parse(self, article_metadata):
collab = contrib.find("institution")
if collab:
- collab_affil = ""
- collab_name = collab.get_text()
+ if type(collab.contents[0].get_text()) == str:
+ collab_name = collab.contents[0].get_text().strip()
+ else:
+ collab_name = collab.get_text().strip()
+
if collab.find("address"):
collab_affil = collab.find("address").get_text()
-
- self.collab = {
- "collab": collab_name,
- "aff": collab_affil,
- "affid": [],
- "xaff": [],
- "xemail": [],
- "email": [],
- "corresp": False,
- "rid": None,
- }
+ else:
+ collab_affil = ""
+
+ if not self.collab:
+ self.collab = {
+ "collab": collab_name,
+ "aff": collab_affil,
+ "affid": [],
+ "xaff": [],
+ "xemail": [],
+ "email": [],
+ "corresp": False,
+ "rid": None,
+ "surname": "",
+ "given": "",
+ "native_lang": "",
+ "orcid": "",
+ }
l_correspondent = False
if contrib.get("corresp", None) == "yes":
@@ -452,7 +496,7 @@ def parse(self, article_metadata):
contrib_id = contrib.find_all("contrib-id")
orcid = []
for c in contrib_id:
- if c.get("contrib-id-type", "") == "orcid":
+ if (c.get("contrib-id-type", "") == "orcid") or ("orcid" in c.get_text()):
orcid.append(c.get_text(separator=" ").strip())
c.decompose()
@@ -490,6 +534,16 @@ def parse(self, article_metadata):
if collab:
auth["collab"] = collab_name
+ # Check if author is a duplicate of a collaboration
+ if auth["surname"] == "" and auth["collab"]:
+ # delete email and correspondence info for collabs
+ auth["email"] = []
+ auth["xemail"] = []
+ auth["corresp"] = False
+ # if the collab is already in author list, skip
+ if auth in authors_out:
+ continue
+
if contrib.get("contrib-type", "author") == "author":
authors_out.append(auth)
default_key = "ALLAUTH"
diff --git a/tests/stubdata/input/jats_a+a_50368-24_collab.xml b/tests/stubdata/input/jats_a+a_nested_collab.xml
similarity index 100%
rename from tests/stubdata/input/jats_a+a_50368-24_collab.xml
rename to tests/stubdata/input/jats_a+a_nested_collab.xml
diff --git a/tests/stubdata/output/jats_a+a_50368-24_collab.json b/tests/stubdata/output/jats_a+a_nested_collab.json
similarity index 64%
rename from tests/stubdata/output/jats_a+a_50368-24_collab.json
rename to tests/stubdata/output/jats_a+a_nested_collab.json
index 59f89c4..1499a4c 100644
--- a/tests/stubdata/output/jats_a+a_50368-24_collab.json
+++ b/tests/stubdata/output/jats_a+a_nested_collab.json
@@ -8,7 +8,7 @@
"collab": true
},
"name": {
- "collab": "Euclid Collaboration\n\n\t\t\t\t\t\t\n\n\nDournac\nF.\n\n1\n\n\nhttp://orcid.org/0000-0001-8555-9003\n\nBlanchard\nA.\n\n1\n\u2605\n\n\nhttp://orcid.org/0000-0003-4285-9086\n\nIli\u0107\nS.\n\n2\n1\n\n\nhttp://orcid.org/0000-0002-9416-2320\n\nLamine\nB.\n\n1\n\n\nhttp://orcid.org/0000-0002-3199-0399\n\nTutusaus\nI.\n\n1\n\n\n\nAmara\nA.\n\n3\n\n\nhttp://orcid.org/0000-0002-2041-8784\n\nAndreon\nS.\n\n4\n\n\nhttp://orcid.org/0000-0003-4444-8651\n\nAuricchio\nN.\n\n5\n\n\nhttp://orcid.org/0000-0002-1371-5705\n\nAussel\nH.\n\n6\n\n\nhttp://orcid.org/0000-0003-4145-1943\n\nBaldi\nM.\n\n7\n5\n8\n\n\nhttp://orcid.org/0000-0002-8900-0298\n\nBardelli\nS.\n\n5\n\n\n\nBodendorf\nC.\n\n9\n\n\nhttp://orcid.org/0000-0002-3336-9977\n\nBonino\nD.\n\n10\n\n\nhttp://orcid.org/0000-0002-0808-6908\n\nBranchini\nE.\n\n11\n12\n4\n\n\n\nBrau-Nogue\nS.\n\n1\n\n\nhttp://orcid.org/0000-0001-9506-5680\n\nBrescia\nM.\n\n13\n14\n15\n\n\nhttp://orcid.org/0000-0003-4359-8797\n\nBrinchmann\nJ.\n\n16\n\n\nhttp://orcid.org/0000-0003-3399-3574\n\nCamera\nS.\n\n17\n18\n10\n\n\nhttp://orcid.org/0000-0002-3309-7692\n\nCapobianco\nV.\n\n10\n\n\nhttp://orcid.org/0000-0002-3130-0204\n\nCarretero\nJ.\n\n19\n20\n\n\nhttp://orcid.org/0000-0002-4751-5138\n\nCasas\nS.\n\n21\n\n\nhttp://orcid.org/0000-0001-9875-8263\n\nCastellano\nM.\n\n22\n\n\nhttp://orcid.org/0000-0002-3787-4196\n\nCavuoti\nS.\n\n14\n15\n\n\n\nCimatti\nA.\n\n23\n\n\nhttp://orcid.org/0000-0003-2508-0046\n\nCongedo\nG.\n\n24\n\n\n\nConselice\nC. J.\n\n25\n\n\nhttp://orcid.org/0000-0002-6710-8476\n\nConversi\nL.\n\n26\n27\n\n\nhttp://orcid.org/0000-0002-5317-7518\n\nCopin\nY.\n\n28\n\n\nhttp://orcid.org/0000-0003-0758-6510\n\nCourbin\nF.\n\n29\n\n\nhttp://orcid.org/0000-0003-0509-1776\n\nCourtois\nH. M.\n\n30\n\n\n\nDa Silva\nA.\n\n31\n32\n\n\nhttp://orcid.org/0000-0002-5887-6799\n\nDegaudenzi\nH.\n\n33\n\n\nhttp://orcid.org/0000-0002-4767-2360\n\nDi Giorgio\nA. M.\n\n34\n\n\nhttp://orcid.org/0000-0001-5075-1601\n\nDinis\nJ.\n\n31\n32\n\n\nhttp://orcid.org/0000-0003-4203-3954\n\nDouspis\nM.\n\n35\n\n\nhttp://orcid.org/0000-0002-6533-2810\n\nDubath\nF.\n\n33\n\n\n\nDupac\nX.\n\n27\n\n\nhttp://orcid.org/0000-0002-1128-0664\n\nDusini\nS.\n\n36\n\n\n\nEalet\nA.\n\n28\n\n\nhttp://orcid.org/0000-0002-3089-7846\n\nFarina\nM.\n\n34\n\n\nhttp://orcid.org/0000-0002-9594-9387\n\nFarrens\nS.\n\n6\n\n\n\nFerriol\nS.\n\n28\n\n\nhttp://orcid.org/0000-0002-7400-2135\n\nFrailis\nM.\n\n37\n\n\nhttp://orcid.org/0000-0002-0585-6591\n\nFranceschi\nE.\n\n5\n\n\nhttp://orcid.org/0000-0002-3748-5115\n\nGaleotta\nS.\n\n37\n\n\nhttp://orcid.org/0000-0003-4744-9748\n\nGillard\nW.\n\n38\n\n\nhttp://orcid.org/0000-0002-4478-1270\n\nGillis\nB.\n\n24\n\n\nhttp://orcid.org/0000-0002-9590-7961\n\nGiocoli\nC.\n\n5\n39\n\n\nhttp://orcid.org/0000-0003-2694-9284\n\nGranett\nB. R.\n\n4\n\n\nhttp://orcid.org/0000-0002-5688-0663\n\nGrazian\nA.\n\n40\n\n\n\nGrupp\nF.\n\n9\n41\n\n\nhttp://orcid.org/0000-0001-9648-7260\n\nHaugan\nS. V. H.\n\n42\n\n\n\nHolmes\nW.\n\n43\n\n\nhttp://orcid.org/0000-0002-2960-978X\n\nHook\nI.\n\n44\n\n\nhttp://orcid.org/0009-0000-2474-3130\n\nHormuth\nF.\n\n45\n\n\nhttp://orcid.org/0000-0002-3363-0936\n\nHornstrup\nA.\n\n46\n47\n\n\n\nHudelot\nP.\n\n48\n\n\nhttp://orcid.org/0000-0003-3804-2137\n\nJahnke\nK.\n\n49\n\n\nhttp://orcid.org/0000-0003-1804-7715\n\nKeih\u00e4nen\nE.\n\n50\n\n\nhttp://orcid.org/0000-0002-0302-5735\n\nKermiche\nS.\n\n38\n\n\nhttp://orcid.org/0000-0002-2590-1273\n\nKiessling\nA.\n\n43\n\n\nhttp://orcid.org/0000-0001-9513-7138\n\nKilbinger\nM.\n\n51\n\n\nhttp://orcid.org/0009-0006-5823-4880\n\nKubik\nB.\n\n28\n\n\nhttp://orcid.org/0000-0003-2791-2117\n\nK\u00fcmmel\nM.\n\n41\n\n\nhttp://orcid.org/0000-0002-3052-7394\n\nKunz\nM.\n\n52\n\n\nhttp://orcid.org/0000-0002-4618-3063\n\nKurki-Suonio\nH.\n\n53\n54\n\n\nhttp://orcid.org/0000-0003-4172-4606\n\nLigori\nS.\n\n10\n\n\nhttp://orcid.org/0000-0003-4324-7794\n\nLilje\nP. B.\n\n42\n\n\nhttp://orcid.org/0000-0003-2317-5471\n\nLindholm\nV.\n\n53\n54\n\n\nhttp://orcid.org/0000-0001-5966-1434\n\nLloro\nI.\n\n55\n\n\nhttp://orcid.org/0000-0002-4761-1242\n\nMaino\nD.\n\n56\n57\n58\n\n\nhttp://orcid.org/0000-0003-2593-4355\n\nMaiorano\nE.\n\n5\n\n\nhttp://orcid.org/0000-0001-5758-4658\n\nMansutti\nO.\n\n37\n\n\nhttp://orcid.org/0000-0001-7242-3852\n\nMarggraf\nO.\n\n59\n\n\nhttp://orcid.org/0000-0001-6764-073X\n\nMarkovic\nK.\n\n43\n\n\nhttp://orcid.org/0000-0003-2786-7790\n\nMartinet\nN.\n\n60\n\n\nhttp://orcid.org/0000-0002-8850-0303\n\nMarulli\nF.\n\n61\n5\n8\n\n\nhttp://orcid.org/0000-0002-6085-3780\n\nMassey\nR.\n\n62\n\n\n\nMaurogordato\nS.\n\n63\n\n\nhttp://orcid.org/0000-0002-4040-7783\n\nMedinaceli\nE.\n\n5\n\n\nhttp://orcid.org/0000-0002-2849-559X\n\nMei\nS.\n\n64\n\n\n\nMellier\nY.\n\n65\n48\n\n\nhttp://orcid.org/0000-0003-1225-7084\n\nMeneghetti\nM.\n\n5\n8\n\n\nhttp://orcid.org/0000-0001-6870-8900\n\nMerlin\nE.\n\n22\n\n\n\nMeylan\nG.\n\n29\n\n\nhttp://orcid.org/0000-0002-7616-7136\n\nMoresco\nM.\n\n61\n5\n\n\nhttp://orcid.org/0000-0002-3473-6716\n\nMoscardini\nL.\n\n61\n5\n8\n\n\nhttp://orcid.org/0000-0002-1751-5946\n\nMunari\nE.\n\n37\n\n\n\nNiemi\nS.-M.\n\n66\n\n\nhttp://orcid.org/0000-0002-8987-7401\n\nNightingale\nJ. W.\n\n67\n68\n\n\nhttp://orcid.org/0000-0001-7951-0166\n\nPadilla\nC.\n\n19\n\n\nhttp://orcid.org/0000-0002-8108-9179\n\nPaltani\nS.\n\n33\n\n\nhttp://orcid.org/0000-0002-4869-3227\n\nPasian\nF.\n\n37\n\n\n\nPedersen\nK.\n\n69\n\n\nhttp://orcid.org/0000-0002-0644-5727\n\nPercival\nW. J.\n\n70\n71\n72\n\n\nhttp://orcid.org/0000-0002-4203-9320\n\nPettorino\nV.\n\n66\n\n\nhttp://orcid.org/0000-0002-0249-2104\n\nPires\nS.\n\n6\n\n\nhttp://orcid.org/0000-0003-4067-9196\n\nPolenta\nG.\n\n73\n\n\n\nPoncet\nM.\n\n74\n\n\nhttp://orcid.org/0000-0001-9045-9154\n\nPopa\nL. A.\n\n75\n\n\nhttp://orcid.org/0000-0001-7085-0412\n\nPozzetti\nL.\n\n5\n\n\nhttp://orcid.org/0000-0002-7819-6918\n\nRaison\nF.\n\n9\n\n\n\nRebolo\nR.\n\n76\n77\n\n\nhttp://orcid.org/0000-0001-9856-1970\n\nRenzi\nA.\n\n78\n36\n\n\nhttp://orcid.org/0000-0002-4485-8549\n\nRhodes\nJ.\n\n43\n\n\nhttp://orcid.org/0000-0001-7020-1172\n\nRiccio\nG.\n\n14\n\n\nhttp://orcid.org/0000-0003-3069-9222\n\nRomelli\nE.\n\n37\n\n\nhttp://orcid.org/0000-0001-9587-7822\n\nRoncarelli\nM.\n\n5\n\n\n\nRossetti\nE.\n\n7\n\n\nhttp://orcid.org/0000-0003-0378-7032\n\nSaglia\nR.\n\n41\n9\n\n\nhttp://orcid.org/0000-0001-7089-4503\n\nSapone\nD.\n\n79\n\n\n\nSchneider\nP.\n\n59\n\n\nhttp://orcid.org/0000-0003-0505-3710\n\nSecroun\nA.\n\n38\n\n\nhttp://orcid.org/0000-0003-2907-353X\n\nSeidel\nG.\n\n49\n\n\nhttp://orcid.org/0000-0002-7536-9393\n\nSeiffert\nM.\n\n43\n\n\nhttp://orcid.org/0000-0002-0211-2861\n\nSerrano\nS.\n\n80\n81\n82\n\n\nhttp://orcid.org/0000-0002-0995-7146\n\nSirignano\nC.\n\n78\n36\n\n\nhttp://orcid.org/0000-0003-2626-2853\n\nSirri\nG.\n\n8\n\n\nhttp://orcid.org/0000-0002-9706-5104\n\nStanco\nL.\n\n36\n\n\nhttp://orcid.org/0000-0003-2592-0113\n\nSurace\nC.\n\n60\n\n\nhttp://orcid.org/0000-0002-1336-8328\n\nTallada-Cresp\u00ed\nP.\n\n83\n20\n\n\nhttp://orcid.org/0000-0001-7475-9894\n\nTavagnacco\nD.\n\n37\n\n\n\nTaylor\nA. N.\n\n24\n\n\n\nTereno\nI.\n\n31\n84\n\n\nhttp://orcid.org/0000-0002-2997-4859\n\nToledo-Moreo\nR.\n\n85\n\n\nhttp://orcid.org/0000-0003-1160-1517\n\nTorradeflot\nF.\n\n20\n83\n\n\n\nValentijn\nE. A.\n\n86\n\n\nhttp://orcid.org/0000-0002-1170-0104\n\nValenziano\nL.\n\n5\n87\n\n\nhttp://orcid.org/0000-0001-6512-6358\n\nVassallo\nT.\n\n41\n37\n\n\nhttp://orcid.org/0000-0003-2387-1194\n\nVeropalumbo\nA.\n\n4\n12\n\n\nhttp://orcid.org/0000-0002-4749-2984\n\nWang\nY.\n\n88\n\n\nhttp://orcid.org/0000-0003-0396-1192\n\nZacchei\nA.\n\n37\n89\n\n\nhttp://orcid.org/0000-0002-2318-301X\n\nZamorani\nG.\n\n5\n\n\nhttp://orcid.org/0000-0003-1962-9805\n\nZoubian\nJ.\n\n38\n\n\nhttp://orcid.org/0000-0002-5845-8132\n\nZucca\nE.\n\n5\n\n\nhttp://orcid.org/0000-0002-0857-0732\n\nBiviano\nA.\n\n37\n89\n\n\nhttp://orcid.org/0000-0003-3278-4607\n\nBolzonella\nM.\n\n5\n\n\nhttp://orcid.org/0000-0001-7387-2633\n\nBoucaud\nA.\n\n64\n\n\nhttp://orcid.org/0000-0002-8201-1525\n\nBozzo\nE.\n\n33\n\n\nhttp://orcid.org/0000-0002-3005-5796\n\nBurigana\nC.\n\n90\n87\n\n\n\nColodro-Conde\nC.\n\n76\n\n\nhttp://orcid.org/0000-0002-6220-9104\n\nDe Lucia\nG.\n\n37\n\n\n\nDi Ferdinando\nD.\n\n8\n\n\n\nEscartin Vigo\nJ. A.\n\n9\n\n\nhttp://orcid.org/0000-0003-2212-367X\n\nFarinelli\nR.\n\n5\n\n\nhttp://orcid.org/0000-0003-4689-3134\n\nGracia-Carpio\nJ.\n\n9\n\n\nhttp://orcid.org/0000-0003-2384-2377\n\nMainetti\nG.\n\n91\n\n\nhttp://orcid.org/0000-0002-6943-7732\n\nMartinelli\nM.\n\n22\n92\n\n\nhttp://orcid.org/0000-0001-8196-1548\n\nMauri\nN.\n\n23\n8\n\n\nhttp://orcid.org/0000-0001-8524-4968\n\nNeissner\nC.\n\n19\n20\n\n\nhttp://orcid.org/0000-0002-4823-3757\n\nSakr\nZ.\n\n93\n1\n94\n\n\nhttp://orcid.org/0009-0008-3864-940X\n\nScottez\nV.\n\n65\n95\n\n\nhttp://orcid.org/0000-0002-4254-5901\n\nTenti\nM.\n\n8\n\n\nhttp://orcid.org/0000-0002-2642-5707\n\nViel\nM.\n\n89\n37\n96\n97\n98\n\n\nhttp://orcid.org/0009-0000-8199-5860\n\nWiesmann\nM.\n\n42\n\n\nhttp://orcid.org/0000-0002-2407-7956\n\nAkrami\nY.\n\n99\n100\n\n\nhttp://orcid.org/0000-0001-7232-5152\n\nAllevato\nV.\n\n14\n\n\nhttp://orcid.org/0000-0002-3579-9583\n\nAnselmi\nS.\n\n36\n78\n101\n\n\nhttp://orcid.org/0000-0002-8211-1630\n\nBaccigalupi\nC.\n\n96\n37\n97\n89\n\n\nhttp://orcid.org/0000-0001-5028-3035\n\nBalaguera-Antolinez\nA.\n\n76\n77\n\n\nhttp://orcid.org/0000-0003-4481-3559\n\nBallardini\nM.\n\n102\n5\n103\n\n\nhttp://orcid.org/0000-0002-9622-7167\n\nBlot\nL.\n\n104\n101\n\n\nhttp://orcid.org/0000-0001-6151-6439\n\nBorgani\nS.\n\n105\n89\n37\n97\n\n\nhttp://orcid.org/0000-0002-6503-5218\n\nBruton\nS.\n\n106\n\n\nhttp://orcid.org/0000-0001-6679-2600\n\nCabanac\nR.\n\n1\n\n\n\nCalabro\nA.\n\n22\n\n\nhttp://orcid.org/0000-0003-2796-2149\n\nCanas-Herrera\nG.\n\n66\n107\n\n\nhttp://orcid.org/0000-0002-9200-7167\n\nCappi\nA.\n\n5\n63\n\n\n\nCarvalho\nC. 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}
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}
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}
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"name": {
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}
],
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}
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}
],
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"name": {
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}
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"name": {
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}
],
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"name": {
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}
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}
],
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"name": {
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"affPubRaw": "INAF-Osservatorio di Astrofisica e Scienza dello Spazio di Bologna, Via Piero Gobetti 93/3, 40129, Bologna, Italy"
}
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"name": {
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}
@@ -147,7 +200,11 @@
"affPubRaw": "Max Planck Institute for Extraterrestrial Physics, Giessenbachstr. 1, 85748, Garching, Germany"
}
],
+ "attrib": {
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"name": {
+ "collab": "Euclid Collaboration",
"given_name": "C.",
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@@ -158,7 +215,12 @@
"affPubRaw": "INAF-Osservatorio Astrofisico di Torino, Via Osservatorio 20, 10025, Pino Torinese (TO), Italy"
}
],
+ "attrib": {
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+ "orcid": "0000-0002-3336-9977"
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"name": {
+ "collab": "Euclid Collaboration",
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}
@@ -175,7 +237,12 @@
"affPubRaw": "INAF-Osservatorio Astronomico di Brera, Via Brera 28, 20122, Milano, Italy"
}
],
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+ "orcid": "0000-0002-0808-6908"
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}
],
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"name": {
+ "collab": "Euclid Collaboration",
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"surname": "Brau-Nogue"
}
@@ -203,7 +274,12 @@
"affPubRaw": "INFN section of Naples, Via Cinthia 6, 80126, Napoli, Italy"
}
],
+ "attrib": {
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+ "orcid": "0000-0001-9506-5680"
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"name": {
+ "collab": "Euclid Collaboration",
"given_name": "M.",
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}
@@ -214,7 +290,12 @@
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}
],
+ "attrib": {
+ "collab": true,
+ "orcid": "0000-0003-4359-8797"
+ },
"name": {
+ "collab": "Euclid Collaboration",
"given_name": "J.",
"surname": "Brinchmann"
}
@@ -231,7 +312,12 @@
"affPubRaw": "INAF-Osservatorio Astrofisico di Torino, Via Osservatorio 20, 10025, Pino Torinese (TO), Italy"
}
],
+ "attrib": {
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+ "orcid": "0000-0003-3399-3574"
+ },
"name": {
+ "collab": "Euclid Collaboration",
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}
@@ -242,7 +328,12 @@
"affPubRaw": "INAF-Osservatorio Astrofisico di Torino, Via Osservatorio 20, 10025, Pino Torinese (TO), Italy"
}
],
+ "attrib": {
+ "collab": true,
+ "orcid": "0000-0002-3309-7692"
+ },
"name": {
+ "collab": "Euclid Collaboration",
"given_name": "V.",
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}
@@ -256,7 +347,12 @@
"affPubRaw": "Port d\u2019Informaci\u00f3 Cient\u00edfica, Campus UAB, C. Albareda s/n, 08193, Bellaterra (Barcelona), Spain"
}
],
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+ "orcid": "0000-0002-3130-0204"
+ },
"name": {
+ "collab": "Euclid Collaboration",
"given_name": "J.",
"surname": "Carretero"
}
@@ -267,7 +363,12 @@
"affPubRaw": "Institute for Theoretical Particle Physics and Cosmology (TTK), RWTH Aachen University, 52056, Aachen, Germany"
}
],
+ "attrib": {
+ "collab": true,
+ "orcid": "0000-0002-4751-5138"
+ },
"name": {
+ "collab": "Euclid Collaboration",
"given_name": "S.",
"surname": "Casas"
}
@@ -278,7 +379,12 @@
"affPubRaw": "INAF-Osservatorio Astronomico di Roma, Via Frascati 33, 00078, Monteporzio Catone, Italy"
}
],
+ "attrib": {
+ "collab": true,
+ "orcid": "0000-0001-9875-8263"
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"name": {
+ "collab": "Euclid Collaboration",
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"surname": "Castellano"
}
@@ -292,7 +398,12 @@
"affPubRaw": "INFN section of Naples, Via Cinthia 6, 80126, Napoli, Italy"
}
],
+ "attrib": {
+ "collab": true,
+ "orcid": "0000-0002-3787-4196"
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"name": {
+ "collab": "Euclid Collaboration",
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@@ -303,7 +414,11 @@
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}
],
+ "attrib": {
+ "collab": true
+ },
"name": {
+ "collab": "Euclid Collaboration",
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}
@@ -314,7 +429,12 @@
"affPubRaw": "Institute for Astronomy, University of Edinburgh, Royal Observatory, Blackford Hill, Edinburgh, EH9 3HJ, UK"
}
],
+ "attrib": {
+ "collab": true,
+ "orcid": "0000-0003-2508-0046"
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"name": {
+ "collab": "Euclid Collaboration",
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}
@@ -325,7 +445,11 @@
"affPubRaw": "Jodrell Bank Centre for Astrophysics, Department of Physics and Astronomy, University of Manchester, Oxford Road, Manchester, M13 9PL, UK"
}
],
+ "attrib": {
+ "collab": true
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"name": {
+ "collab": "Euclid Collaboration",
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}
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}
],
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+ "orcid": "0000-0002-6710-8476"
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}
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"affPubRaw": "CERCA/ISO, Department of Physics, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH, 44106, USA"
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}
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"affPubRaw": "INAF-Osservatorio Astronomico di Capodimonte, Via Moiariello 16, 80131, Napoli, Italy"
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}
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"affPubRaw": "IFPU, Institute for Fundamental Physics of the Universe, via Beirut 2, 34151, Trieste, Italy"
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}
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"affPubRaw": "Departamento de Astrof\u00edsica, Universidad de La Laguna, 38206, La Laguna, Tenerife, Spain"
}
],
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"affPubRaw": "Istituto Nazionale di Fisica Nucleare, Sezione di Ferrara, Via Giuseppe Saragat 1, 44122, Ferrara, Italy"
}
],
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"name": {
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}
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"affPubRaw": "INFN, Sezione di Trieste, Via Valerio 2, 34127, Trieste TS, Italy"
}
],
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}
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"affPubRaw": "Minnesota Institute for Astrophysics, University of Minnesota, 116 Church St SE, Minneapolis, MN, 55455, USA"
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],
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],
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}
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"affPubRaw": "INAF-Osservatorio Astronomico di Roma, Via Frascati 33, 00078, Monteporzio Catone, Italy"
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"affPubRaw": "Institute Lorentz, Leiden University, Niels Bohrweg 2, 2333 CA, Leiden, The Netherlands"
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}
],
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],
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"affPubRaw": "Dipartimento di Fisica e Astronomia \u201cG. Galilei\u201d, Universit\u00e0 di Padova, Via Marzolo 8, 35131, Padova, Italy"
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"affPubRaw": "Aix-Marseille Universit\u00e9, CNRS, CNES, LAM, Marseille, France"
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"affPubRaw": "Department of Astronomy & Physics and Institute for Computational Astrophysics, Saint Mary\u2019s University, 923 Robie Street, Halifax, Nova Scotia, B3H 3C3, Canada"
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"affPubRaw": "Departamento F\u00edsica Aplicada, Universidad Polit\u00e9cnica de Cartagena, Campus Muralla del Mar, 30202, Cartagena, Murcia, Spain"
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"affPubRaw": "Universit\u00e9 Paris-Saclay, CNRS, Institut d\u2019astrophysique spatiale, 91405, Orsay, France"
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"affPubRaw": "Aix-Marseille Universit\u00e9, CNRS/IN2P3, CPPM, Marseille, France"
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],
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}
],
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"affPubRaw": "Department of Physics, Oxford University, Keble Road, Oxford, OX1 3RH, UK"
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"affPubRaw": "Institute of Cosmology and Gravitation, University of Portsmouth, Portsmouth, PO1 3FX, UK"
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"affPubRaw": "Department of Physics, P.O. Box 64, 00014, University of Helsinki, Finland"
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"affPubRaw": "Universit\u00e9 Paris-Saclay, CNRS, Institut d\u2019astrophysique spatiale, 91405, Orsay, France"
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"affPubRaw": "Institute of Cosmology and Gravitation, University of Portsmouth, Portsmouth, PO1 3FX, UK"
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@@ -2717,7 +3773,12 @@
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"affPubRaw": "Dipartimento di Fisica, Universit\u00e0 degli studi di Genova, and INFN-Sezione di Genova, via Dodecaneso 33, 16146, Genova, Italy"
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"affPubRaw": "Universit\u00e9 Paris-Saclay, CNRS, Institut d\u2019astrophysique spatiale, 91405, Orsay, France"
}
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"affPubRaw": "Theoretical astrophysics, Department of Physics and Astronomy, Uppsala University, Box 515, 751 20, Uppsala, Sweden"
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@@ -2858,7 +3972,12 @@
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@@ -2869,7 +3988,12 @@
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"affPubRaw": "Department of Astronomy, University of Geneva, ch. d\u2019Ecogia 16, 1290, Versoix, Switzerland"
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+ "[ Tutusaus, \t\t\t\t\t\tI. , \t\t\t\t\t Martinelli, \t\t\t\t\t\tM. , \t\t\t\t\t Cardone, \t\t\t\t\t\tV. F. , et al. \t\t\t\t\t2020, \t\t\t\t\tA&A, \t\t\t\t\t643, \t\t\t\t\tA70 ]",
+ "[ Wang, \t\t\t\t\t\tY. 2008, \t\t\t\t\tPhys. Rev. D, \t\t\t\t\t77, \t\t\t\t\t123525 ]",
+ "[ Wang, \t\t\t\t\t\tY. , & \t\t\t\t\t Zhao, \t\t\t\t\t\tG.-B. 2020, \t\t\t\t\tRes. Astron. Astrophys., \t\t\t\t\t20, \t\t\t\t\t158 ]",
+ "[ Wang, \t\t\t\t\t\tM. S. , \t\t\t\t\t Avila, \t\t\t\t\t\tS. , \t\t\t\t\t Bianchi, \t\t\t\t\t\tD. , \t\t\t\t\t Crittenden, \t\t\t\t\t\tR. , & \t\t\t\t\t Percival, \t\t\t\t\t\tW. J. 2020, \t\t\t\t\tJCAP 10, \t\t\t\t\t022 ]",
+ "[ Yahia-Cherif, \t\t\t\t\t\tS. , \t\t\t\t\t Blanchard, \t\t\t\t\t\tA. , \t\t\t\t\t Camera, \t\t\t\t\t\tS. , et al. \t\t\t\t\t2021, \t\t\t\t\tA&A, \t\t\t\t\t649, \t\t\t\t\tA52 ]"
],
"subtitle": {
"textEnglish": "XLVII. Improving cosmological constraints using a new multi-tracer method with the spectroscopic and photometric samples"
diff --git a/tests/stubdata/output/jats_nature_natsd_12_7375.json b/tests/stubdata/output/jats_nature_natsd_12_7375.json
index 1244bda..4c8a83d 100644
--- a/tests/stubdata/output/jats_nature_natsd_12_7375.json
+++ b/tests/stubdata/output/jats_nature_natsd_12_7375.json
@@ -379,6 +379,23 @@
"collab": "The Diamater Study Group"
}
},
+ {
+ "affiliation": [
+ {
+ "affPubID": [
+ {
+ "affID": "grid.410543.7",
+ "affIDType": "GRID"
+ },
+ {
+ "affID": "0000 0001 2188 478X",
+ "affIDType": "ISNI"
+ }
+ ],
+ "affPubRaw": "Postgraduate Program on Tocogynecology, Department of Gynecology and Obstetrics, Botucatu Medical School, S\u00e3o Paulo State University (UNESP), Botucatu, S\u00e3o Paulo, Brazil"
+ }
+ ]
+ },
{
"affiliation": [
{
diff --git a/tests/stubdata/output/jats_sci_376_521.json b/tests/stubdata/output/jats_sci_376_521.json
index 2c43d28..68fae7e 100644
--- a/tests/stubdata/output/jats_sci_376_521.json
+++ b/tests/stubdata/output/jats_sci_376_521.json
@@ -8,7 +8,7 @@
"collab": true
},
"name": {
- "collab": "The Fermi-LAT Collaboration*\u2020"
+ "collab": "The Fermi-LAT Collaboration"
}
}
],
diff --git a/tests/stubdata/output/jats_springer_EPJC_s10052-023-11699-1.json b/tests/stubdata/output/jats_springer_EPJC_s10052-023-11699-1.json
index ae4600b..ca681a7 100644
--- a/tests/stubdata/output/jats_springer_EPJC_s10052-023-11699-1.json
+++ b/tests/stubdata/output/jats_springer_EPJC_s10052-023-11699-1.json
@@ -73016,6 +73016,139 @@
"name": {
"collab": "ATLAS Collaboration"
}
+ },
+ {
+ "affiliation": [
+ {
+ "affPubID": [
+ {
+ "affID": "grid.47840.3f",
+ "affIDType": "GRID"
+ },
+ {
+ "affID": "0000 0001 2181 7878",
+ "affIDType": "ISNI"
+ }
+ ],
+ "affPubRaw": "University of California, Berkeley, CA, USA"
+ },
+ {
+ "affPubID": [
+ {
+ "affID": "grid.5100.4",
+ "affIDType": "GRID"
+ },
+ {
+ "affID": "0000 0001 2322 497X",
+ "affIDType": "ISNI"
+ }
+ ],
+ "affPubRaw": "Faculty of Physics, University of Bucharest, Bucharest, Romania"
+ },
+ {
+ "affPubID": [
+ {
+ "affID": "grid.462638.d",
+ "affIDType": "GRID"
+ },
+ {
+ "affID": "0000 0001 0696 719X",
+ "affIDType": "ISNI"
+ }
+ ],
+ "affPubRaw": "iThemba Labs, Western Cape, South Africa"
+ },
+ {
+ "affPubID": [
+ {
+ "affID": "grid.412801.e",
+ "affIDType": "GRID"
+ },
+ {
+ "affID": "0000 0004 0610 3238",
+ "affIDType": "ISNI"
+ }
+ ],
+ "affPubRaw": "Department of Physics, University of South Africa, Pretoria, South Africa"
+ },
+ {
+ "affPubID": [
+ {
+ "affID": "grid.442325.6",
+ "affIDType": "GRID"
+ }
+ ],
+ "affPubRaw": "University of Zululand, KwaDlangezwa, South Africa"
+ },
+ {
+ "affPubID": [
+ {
+ "affID": "grid.411840.8",
+ "affIDType": "GRID"
+ },
+ {
+ "affID": "0000 0001 0664 9298",
+ "affIDType": "ISNI"
+ }
+ ],
+ "affPubRaw": "Facult\u00e9 des Sciences Semlalia, Universit\u00e9 Cadi Ayyad, LPHEA-Marrakech, Marrakech, Morocco"
+ },
+ {
+ "affPubID": [
+ {
+ "affID": "grid.501615.6",
+ "affIDType": "GRID"
+ },
+ {
+ "affID": "0000 0004 6007 5493",
+ "affIDType": "ISNI"
+ }
+ ],
+ "affPubRaw": "Institute of Applied Physics, Mohammed VI Polytechnic University, Ben Guerir, Morocco"
+ },
+ {
+ "affPubID": [
+ {
+ "affID": "grid.440573.1",
+ "affIDType": "GRID"
+ },
+ {
+ "affID": "0000 0004 1755 5934",
+ "affIDType": "ISNI"
+ }
+ ],
+ "affPubRaw": "New York University Abu Dhabi, Abu Dhabi, United Arab Emirates"
+ },
+ {
+ "affPubID": [
+ {
+ "affID": "grid.264978.6",
+ "affIDType": "GRID"
+ },
+ {
+ "affID": "0000 0000 9564 9822",
+ "affIDType": "ISNI"
+ }
+ ],
+ "affPubRaw": "University of Georgia, Tbilisi, Georgia"
+ },
+ {
+ "affPubID": [
+ {
+ "affID": "grid.9132.9",
+ "affIDType": "GRID"
+ },
+ {
+ "affID": "0000 0001 2156 142X",
+ "affIDType": "ISNI"
+ }
+ ],
+ "affPubRaw": "CERN, 1211, Geneva 23, Switzerland"
+ }
+ ],
+ "attrib": {
+ "email": "atlas.publications@cern.ch"
+ }
}
],
"copyright": {
diff --git a/tests/stubdata/output/jats_springer_JHEP_JHEP07_2023_200.json b/tests/stubdata/output/jats_springer_JHEP_JHEP07_2023_200.json
index 0d7494a..74b260c 100644
--- a/tests/stubdata/output/jats_springer_JHEP_JHEP07_2023_200.json
+++ b/tests/stubdata/output/jats_springer_JHEP_JHEP07_2023_200.json
@@ -11,6 +11,26 @@
"collab": "The ALICE collaboration"
}
},
+ {
+ "affiliation": [
+ {
+ "affPubID": [
+ {
+ "affID": "grid.9132.9",
+ "affIDType": "GRID"
+ },
+ {
+ "affID": "0000 0001 2156 142X",
+ "affIDType": "ISNI"
+ }
+ ],
+ "affPubRaw": "CERN, CH-1211, Geneva 23, Switzerland"
+ }
+ ],
+ "attrib": {
+ "email": "ALICE-publications@cern.ch"
+ }
+ },
{
"affiliation": [
{
diff --git a/tests/stubdata/output/jats_springer_jhep_2022_05_05.json b/tests/stubdata/output/jats_springer_jhep_2022_05_05.json
index b4d62b1..c8ce4bf 100644
--- a/tests/stubdata/output/jats_springer_jhep_2022_05_05.json
+++ b/tests/stubdata/output/jats_springer_jhep_2022_05_05.json
@@ -11,6 +11,39 @@
"collab": "The CMS collaboration"
}
},
+ {
+ "affiliation": [
+ {
+ "affPubID": [
+ {
+ "affID": "grid.11696.39",
+ "affIDType": "GRID"
+ },
+ {
+ "affID": "0000 0004 1937 0351",
+ "affIDType": "ISNI"
+ }
+ ],
+ "affPubRaw": "Universit\u00e0 di Trento, Trento, Italy"
+ },
+ {
+ "affPubID": [
+ {
+ "affID": "grid.9132.9",
+ "affIDType": "GRID"
+ },
+ {
+ "affID": "0000 0001 2156 142X",
+ "affIDType": "ISNI"
+ }
+ ],
+ "affPubRaw": "CERN, CH-1211, Geneva 23, Switzerland"
+ }
+ ],
+ "attrib": {
+ "email": "cms-publication-committee-chair@cern.ch"
+ }
+ },
{
"affiliation": [
{
diff --git a/tests/test_jats.py b/tests/test_jats.py
index d4c3692..fde4c01 100644
--- a/tests/test_jats.py
+++ b/tests/test_jats.py
@@ -101,6 +101,7 @@ def test_jats(self):
"jats_liebert_no_journal_title",
"jats_liebert_atypon",
"jats_aip_native_strip",
+ "jats_a+a_nested_collab",
]
for f in filenames: