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environment.yml
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name: BMyRepCLL
channels:
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.0=anacondar_1
- bamtools=2.4.1=1
- bbmap=38.84=h516909a_0
- bcftools=1.7=0
- bedtools=2.26.0=0
- binutils_impl_linux-64=2.33.1=he6710b0_7
- binutils_linux-64=2.33.1=h9595d00_15
- bwa=0.7.17=h5bf99c6_8
- bwidget=1.9.11=1
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2022.4.26=h06a4308_0
- cairo=1.16.0=hf32fb01_1
- certifi=2021.5.30=py36h06a4308_0
- curl=7.69.1=hbc83047_0
- dbus=1.13.18=hb2f20db_0
- emboss=6.6.0=he06d7ca_1
- expat=2.4.4=h295c915_0
- fontconfig=2.13.1=h6c09931_0
- freebayes=1.1.0.46=py36h82df9c4_5
- freetype=2.11.0=h70c0345_0
- fribidi=1.0.10=h7b6447c_0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_15
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_15
- giflib=5.1.4=h14c3975_1
- glib=2.69.1=h4ff587b_1
- graphite2=1.3.14=h23475e2_0
- gsl=2.4=h14c3975_4
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_15
- harfbuzz=2.8.1=h6f93f22_0
- htslib=1.7=0
- icu=58.2=he6710b0_3
- jpeg=9e=h7f8727e_0
- krb5=1.17.1=h173b8e3_0
- ld_impl_linux-64=2.33.1=h53a641e_7
- libcurl=7.69.1=h20c2e04_0
- libedit=3.1.20210910=h7f8727e_0
- libffi=3.3=he6710b0_2
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.3.0=h5101ec6_17
- libgd=2.2.5=h8e06009_4
- libgfortran-ng=7.5.0=ha8ba4b0_17
- libgfortran4=7.5.0=ha8ba4b0_17
- libgomp=9.3.0=h5101ec6_17
- libpng=1.6.37=hbc83047_0
- libssh2=1.10.0=h8f2d780_0
- libstdcxx-ng=9.3.0=hd4cf53a_17
- libtiff=4.1.0=h2733197_1
- libuuid=1.0.3=h7f8727e_2
- libwebp=1.0.1=h8e7db2f_0
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.12=h03d6c58_0
- lz4-c=1.9.3=h295c915_1
- make=4.2.1=h1bed415_1
- ncurses=6.3=h7f8727e_2
- openjdk=11.0.13=h87a67e3_0
- openssl=1.1.1n=h7f8727e_0
- pango=1.45.3=hd140c19_0
- parallel=20160622=1
- pcre=8.45=h295c915_0
- perl=5.26.2=h14c3975_0
- perl-threaded=5.32.1=hdfd78af_1
- pip=21.2.2=py36h06a4308_0
- pixman=0.40.0=h7f8727e_1
- python=3.6.13=h12debd9_1
- r=3.6.0=r36_0
- r-base=3.6.1=haffb61f_2
- r-boot=1.3_20=r36h6115d3f_0
- r-class=7.3_15=r36h96ca727_0
- r-cluster=2.0.8=r36ha65eedd_0
- r-codetools=0.2_16=r36h6115d3f_0
- r-foreign=0.8_71=r36h96ca727_0
- r-kernsmooth=2.23_15=r36ha65eedd_4
- r-lattice=0.20_38=r36h96ca727_0
- r-mass=7.3_51.3=r36h96ca727_0
- r-matrix=1.2_17=r36h96ca727_0
- r-mgcv=1.8_28=r36h96ca727_0
- r-nlme=3.1_139=r36ha65eedd_0
- r-nnet=7.3_12=r36h96ca727_0
- r-recommended=3.6.0=r36_0
- r-rpart=4.1_15=r36h96ca727_0
- r-spatial=7.3_11=r36h96ca727_4
- r-survival=2.44_1.1=r36h96ca727_0
- readline=8.1.2=h7f8727e_1
- samtools=1.7=1
- seqtk=1.3=h5bf99c6_3
- setuptools=58.0.4=py36h06a4308_0
- sqlite=3.38.2=hc218d9a_0
- tk=8.6.11=h1ccaba5_0
- tktable=2.10=h14c3975_0
- wheel=0.37.1=pyhd3eb1b0_0
- xz=5.2.5=h7b6447c_0
- zlib=1.2.11=h7f8727e_4
- zstd=1.4.9=haebb681_0
prefix: /home/azahara/miniconda3/envs/BMyRepCLL