refresh-journal-lists.yml

name: Refresh Journal Lists

on:
  workflow_dispatch:
    # Allow to run manually

jobs:
  publish:
    name: Refresh Journal List Files
    runs-on: ubuntu-latest
    steps:
      - name: Fetch all history for all tags and branches
        uses: actions/checkout@v2
        with:
          ref: main
          persist-credentials: false
          fetch-depth: 0
      - name: Set up JDK
        uses: actions/setup-java@v2
        with:
          java-version: 14
      - uses: actions/cache@v1
        name: Restore gradle wrapper
        with:
          path: ~/.gradle/wrapper
          key: ${{ runner.os }}-gradle-${{ hashFiles('gradle/wrapper/gradle-wrapper.properties') }}
      - name: Update journal lists
        run: |
          set +o pipefail

          # prepare journal lists
          cd /tmp
          git clone --depth=1 https://github.com/JabRef/abbrv.jabref.org.git
          cd abbrv.jabref.org/journals

          # remove all lists without dot in them
          # we use abbrevatiation lists containing dots in them only (to be consistent)
          rm journal_abbreviations_entrez.csv
          rm journal_abbreviations_medicus.csv
          rm journal_abbreviations_webofscience-dots.csv

          # prepare building
          mkdir -p $GITHUB_WORKSPACE/build/journals
          cp * $GITHUB_WORKSPACE/build/journals/

          # ensure that the .java classes are the most recent ones
          cp $GITHUB_WORKSPACE/src/main/java/org/jabref/logic/journals/* $GITHUB_WORKSPACE/buildSrc/src/copied/java/org/jabref/logic/journals

          # create .mv file
          cd $GITHUB_WORKSPACE
          ./gradlew generateJournalAbbreviationList
      - uses: peter-evans/create-pull-request@v3
        with:
          token: ${{ secrets.GITHUB_TOKEN }}
          branch: update-journallist
          title: "[Bot] Update Journal abbrev list"
          commit-message: Update journal abbrev list