From cdc2d0a3273cbe20dab8935b9e5fbc70f0cb7097 Mon Sep 17 00:00:00 2001 From: Joe Thorley Date: Tue, 10 Dec 2024 10:35:02 -0800 Subject: [PATCH] getting ready for release --- NEWS.md | 2 +- cran-comments.md | 4 ---- data/boron_pred.rda | Bin 4382 -> 4364 bytes data/dist_data.rda | Bin 271 -> 280 bytes vignettes/additional-technical-details.Rmd | 2 +- 5 files changed, 2 insertions(+), 6 deletions(-) diff --git a/NEWS.md b/NEWS.md index bcd563e2..e3c96cb7 100644 --- a/NEWS.md +++ b/NEWS.md @@ -252,7 +252,7 @@ The function `ssd_fit_burrlioz()` was added to approximate the behaviour of [Bur Hazard concentration estimation is performed by `ssd_hc()` (which is wrapped by `predict()`) and hazard protection estimation by `ssd_hp()`. By default confidence intervals are estimated by parametric bootstrapping. -To reduce the time required for bootstrapping, parallelization was implemented using the [future](https://github.com/HenrikBengtsson/future) package. +To reduce the time required for bootstrapping, parallelization was implemented using the [future](https://github.com/futureverse/future) package. The following arguments were added to `ssd_hc()` and `ssd_hp()` diff --git a/cran-comments.md b/cran-comments.md index 8058977a..fcbe2a74 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -9,7 +9,3 @@ > libs 16.9Mb The large size of these sub-directories is necessary. - -## CRAN Package Check Results for Package - -Fixed M1mac issue. diff --git a/data/boron_pred.rda b/data/boron_pred.rda index 08434f2823d58a305ef2c08872c7da5d1b144fc9..170c0382e0fbf7d0ae7fac0bce925debbcbc46d6 100644 GIT binary patch literal 4364 zcmV+n5%casT4*^jL0KkKSwo^Mw*U+#fB*mg|NsC0|NsC0|NsC0|NsC0|NsC0|NsC0 z|NsC0|Nr0$-vHOk-)C=q?c2=fq3?a~Cy$Vw>FZ;)+}-nizHhbmDkef24NWsh+KfQR zdW|s|7)Bw4X!Myf0BMsZ)MRZ>Bx!`xG>ry^fMjSfsM8ZB$)q%CiIDW3rcFIf8%dLD zdYX9}XbI$=nwok|1t9`V1wElO)byK1(ofW$2*k-YM%0@G$+a;vK~3tJsNR7?^-m=A zJSIa%3Vwk-28KY=o@h^0^vx;c#!XYqr1d=w1bb9@H9VSPG|GCO3S@Ymrka8%(KSsn zJs>n_^)z~!0il!B^)xid84Vtx>S_9+8UrSQnwol#Q`7;V4K&fFni@1=4W^(PX`s=gKy5$)rqm4s(^2U?AkY9Z zGHB82G6G2<5uzC`dhtg>{$it=rHV&3fI6#ne%m^2b!2AORsq6N(#&<9zJyqoE4U=b}&*c#K1ep_Jd{xkZ0SE)N zuN3#4BAp>B8&#eZY2l>%K5C}31PNJahZpvDKl^Y5UFL!$$A4QA1&MzpA%A<~vQb^G zaSat0J0Imn8H;8PZS~q^MvEN7!7;`>zZS%g6C;{53;+WW7!SfRv%fCuD|SK)5Dlul z+9+;AW2tMC5Atn}_!>#R{n_5kYZ` z6n4`*KvpuE!zMtq@j(wYqBMgdL^neeCgY>y+oJh9?1`anBkt~Tb1$_J1{^6eg0L42_97>q|0VjkTVFqJyQFtuPpmt$AVw{sA*`*u1 z%J{k%GI;g^Ri=5myIv55J8H1!=!#S~J;KpWO3GpQOXmn-F{#Y3+8=VCG@;mtQk%Zi za`j4k)kS3+)`Izf@Pgl>K~S1ih=!RGy?cLm`!!zsJJQ==9BmgW+l)ZhOxX9(=7a9% z*33U2j6&sq+PqwYG{VFh5dQ(m#+3I961(f~3ItAaLIU_Sk1qBsyr+-DOy%2Z-9P@g zm28zKXR&LGn-~z) zqL_vj`q$3V?mm@yC1B$^Nw%nXvikB9+Y zp^~m>Bf6ri6_RpBZdlr}HPgdD>3FgS1K^fdfvCq2P4N{M*%?xIApThdN*We;^lgz< zqpl@%rbxne#Bwy!>B^rnox(+`FV4NH{{c=>*@9BENUY?l(kn`;x{5h6rcddNre92B zW;#KK%r4QLoc*xL7{)QSofyYDF^qMF7{FnMAp*bz00K*xp+-5YNxLQ1?iTPRU+UqItLx%sA|drSq5- z;HAi*+@`Ce@Wr>e-pcXm*|~)9p&Paqv{*(8s{1AWT=kwde-By#9%ywDHF z33{KtO(i6~r{0?uB~){;akQAcd|X_W9lq(z#y~ZB3NUr97V;i!XsR(ZY*6l%wccL) z^f=Ad3W4dJk~*1${TYb*cv%($9fa5!Fy)-BYWlP9EB&LEShErKa3->U(`}r36&Um0 zyb?uV7}lPwYhnRG^S9%2%erdE0qHh_H0>U$TA}qFbhhScrG6?odh|th-Dj{bn+}C` z`cMXT9dRZp)?rH^C&5O|H%D-9JuN1HC|#sT6%q1eU@c4>Al8=NpmTr#uy$jBz(>IG z5E6s6wHAYda~U#2z&UM{dr8Ya$LR?+n6fk$0w!JyA}Y)Oo|5{bRz|I%dIqqm5zeEV z%)toofNpgcByb4*eM9MsAc|WLJVNaRO@G{Nh65c!q3W}*k@ZJ{>!7%3auE=S4tjpP z=~DbsDMA`XrRo8}2rMLp05=4_{44)J>P)PAsYHfIgL!l;q>HaF#i9LSpGoC+TIy?y z{J)pQzp0QTqStPU=0yP)8aFA%p@T~63#g+S`cRhmZ{~yintS)Wv${j=H0b@CuiO%{ zgu10M$jWU=;3En)rC5LfT-GS@0zoAxrNqAV-gYd63+Cq4BXb)+2F}HZ!rRy!d`zP`GOoZqlQUfFc&gK#UNc~+(Kr61h(D$xg ze|^*IbrqsMv3%%5D5mRE+g@8RfK6$w?4C+PTxtg++N z-haR1^lyHr^P=$*0ZCsf(huDio5|Vn9|bSjPP|dEe(Jsp7NdpX&%uO91wm^_1r=hQ zNChJ8^S&9I-j8D&gKbM!rZKa*TFfrPf4q#3&9l1M-W^0`;%cpKWPno_K0K}$jmf;_ z<7p~0RQ7s2FYj)xqypM#Fd5EdU%kz>lf;*D9!Xv4*L0rR z%3ZBBe|Aa%;&yUkE0AN2RvCx!!La}jipTnMv5=UPVh9PUEaKW0bLPMT%fmf!1UCwK zMkBs5l>Q+PMLBpXCv9C5QpZ-otrm|2yp0&ThV|2%WGO^`(hHH7S%3N$Fk0oA=Esfa zd+zHieS9nT8vM3&`{*iXrsEfy2WJ|PfK?@$55WH z8AGmjQq?rvL?t8u#`tG*8DHZr_*;Y7?e3liKI4TBwASry*r*`gWbv(9KO9HjAG7_X{XO0024*Cy);aLeR4oyn!DMBdCE=8g+8%U0~tpaUg1o#BO*T zr$SUT@!2VqYw`}u$+T-~Tk#+SqJJliRH8B?36-mUofIu~lqLx{5}0(D&9)-3TpYBu zPVLUPmMU3atO5Lcc?-Wx;Q#O)yql8+uR$<`eaa#yt@c<6Km1>%}V8O&7Vq zM=My}5{m>Y`(X9sxN)>~E(CR!T+*l7u`sYihlc3h1_KwEhJ0F*G!;c{npt7)Dj)H( z22_x|8d~+3>x*5ePSb;)g#ZFq(YX)+i!J9&1F~7IB>B1AeCok=)MT^qc}mx|GZfr3Xi*{QOIz>? zS2eIzaMVL$$|*KT;%V;26}{=u!UU@wLXP^C@PNDw#%Q^x4#Ku27#!f~Pl) zCE-n9QP@>`s%7qhm~>$!=XrJZN7-GTxsMPzQ(^>U12i*p$*#?lPcHN!3LRReLAdI( zad4I@*WBBq>8BB;;ms=Ev<%So$=JD4n=O_oLVb0?spGR^rgbAp+*@DtzrV3_1;%Q^ z?xjKIxOIZ4-+j*19IrRA*<^B0t+Z{s7O>2UDRL4%7&%vi;XBOc6p9c)So_*zwA7Iv z0AcKV&3Z0{3eUzGyhQ3F%+^!tk=qhxkfrHD*`afCz&b#AdI+_3?h|X8M-KXyc~&f$ zd}Fn$SXy&ndLugG_2%niYa|%s7y^@Gfi??L#8cW;Jxu}D7SeeVHB@``FVEA?=a5qh z@rU_wy*Qv7U}Xc(3E?Qt^+nySADY8yVw$~nT+=w(@x|1{>SQd88O)xg2Aei5w8*~D zlw^a7g+lS9O-W3F%GJLzgHeutsB~5}Rfd~xaJx1nSv)b@wp15H_&6h+pzWb3|1c&J z|2n{?0hAZ6JK0R7Q!o1XqfEJL-`OGM%!c3YzEOvLb%6W!^l>(gMF&oU)U?0cjwzv5 zb$(Y+*8AjMZaplLk-Yh&nVpR~#p;?`y28%YY|3^$e^QH4cf;AN8u-gs7Sm;$gL8M? zRX$-G*lnJMdE*7;?Bl|xZs5;v@;B&^AzGrH*X$26fEXf-Sye?^=~{l;^&6foBrU9% zPH4h+vM{HMV*dDSWkCKym1(kYSRot?A{!j&pjMmr=xP(zB1Z~o#AcX<`~p?T5Mh_nVwB{6ljQORf6<3}P0L~=Qq;I|+E zgQxAUSk|}}5;D{|JnR?RS5&n2=V4D{r^my3amvenp?TB$hpsZN=QNjk;_Sje1vVcL z4kIapQ2trxPK9L9b;_gVN3K9r( GMV8=GSY-47 literal 4382 zcmV+(5#jDaT4*^jL0KkKStyQNga8a8fB*mg|NsC0|NsC0|NsC0|NsC0|NsC0|NsC0 z|NsC0|Nr0$-vHC=-)DXG+qCw)y{EpjpC2JR>FZ&4b9c@5`M%xuDI-KOj7&8$dYLq2 z#L0~blS4+07@9Q6p`aRRlSWTd14*FGO)&s8$n_dD42Pm(GCYVfWWqBjWYg5iw4RNr zGemkOC#mF_shUj$L?Bbp(oO0#n^R1Ow4?O`Hq_MdF-Nr~VKmK6G;K9cQR+6K;x!x9 z9#b-EZ8be6!k?ttPeG#)(5LC9qtw*)Ns|pVJsP9b^%*oC)iDoI>UuQP^qWspNYlxu zs33|o)YUW(NDUfoO&VkdhL2O!(;x;$hp2j<(ni#JO#s@O8eua}QZ&)(Zz&BtplCfo zq3UVr8VxiJ8UQ^b)Or!4K=jnm^hc;@G&BGONj)PWsh*~TC+ShN)YH_{3Fw-7Xor(c zO*WI$QwfQ(K*)NBsixG>G(AlW)M)hv6Gn|0sA6aanhew!Lm&@RA*M|+GejC08Vwp6 z8VaYANvV@2)XAjH6GkQ`fuZUeG#Unmj0uxXJf@zb6A|iY0|a`SXlb<=g9rwOLrjet z8&J?_F*MpB$iRa@$ZZJ8qX^nS$q@;OGgN+(c&5>m!&4J7Ow&zIQ%2HeNwqZfHdE8p zGI|rjjF~ngMu~`N=#NbrhK(9CQ`Escr;;|NPe{;WVKY-|X{V{QOpj37nW)C6sp;uW zJc#uklN1O5zgJlFUVuOafItNqNC&_h0st zJJ%#O*&t=&k`+o)l%)Vb2In`yS=2`BUo<-SRs0Q>i$FjI;UDw<=g)nG+Uy(X8-Y@} z2*wBmg8KZRSxf$jOGKfb=tEy3c}-`N7u+~~Ko}DpWn}TvwR{G`3#8ah^S1sA9^JZx z-^bUG_pZc%4%B2bAD?k#llP9`21! zaG_$7d0S@^eG22Tr{kDS=P3sf6@{m1Q==(GV4 zU=Y?(;dDWXBokP@p2>msC-uDb*Fn#!$}n@4UTt+Gb3!vzwO8ZM1Q7x8=>_LjE}Rz+UXS!JYSoM*_A5oD_~kf5v5zf>5Jf-o!Ot+OCIle&uY^Qaw#7ljV8?V+fj>p6lsgQXqSgumJBOVLvvu zs4Nfiu?p#-UPuF67-SHIg-|d!lZQlBC$~mOB(WkvAq}ni$F_y4-dU|H*K*SSoRBC| zD`2?52*JK&{e_D&LOmVvvkz;{I(7AlN&_4o5Q+wh+QG&LyEHAz+ndjR%sLLH>4`oq zH8Wk>4s?cHbjhGV-5?EzKh?|6SL&>8oi_jr)Z`o#!E_O z187^A0Z<`nNav7f~ViQdtUQNjKP6+mu}EI=7C3x;jKM)LnYeYD~fi!KZMcZTJv zF{Bb+8n<;vC!sBUX;I4H?c}qbD#*&$jJjIYM<`s_N6rCyZ4wtf>ge`RIop`7euKAx z4>WtxXJO!+eepWUbe*k_!+ODu1(OVo#A;(b$lqbhb3PSuI^}~kuxI|5MJ^q!u4{ds z?s`TLXU5L1@;tdzZ&T*G2ykcn%$V(z^(`|9i%(hsM?;9Arj1=nIhxdydL(?7m{`(C zU@h!8l+hXi^lI^nLoICc8Rsp0Du5RuSfdqlo1wquqPdz zX$&vWf29fLDh9E)pw7|{QJ@rag}&)Qhj`1I7yzl8d_=XYbFkw=+7%M@XL0p&(ozP2 zOva>uTgFHb4b!{8k_{UGroaJdEeQeus@EbYB}r{%F$VnhQiBf(CO64@hYJHG7BjlW z6t1vCmxOd3-KA1BinB$~GaGsDx|U_Y%wEatjJmRLwUMSkU$Tg)*hOjourlkmO5o^z z1mWR5DsWlGQ)WCu!FM$ADpio|h92WyJt_2FnTz2Ht61`!p$IJ}2msR=<#X^qlB%)s zZs%Fam=7}SiP^Ya&toqUQ!nFYZhU=oQJpSoxuY3+woAEt^+pgVe^kaegX7dy^#KQ* z@kn9`r+?RzieT(+tdB{$J+oGA%6s5$yit;@8$!4j0Ws&p9smcLwZk40@)BRCD5zIy zvgGyeJBvY!E-|M`Gbl60L~eBLuJOIB?fZ~@cwzg4KDl7M+zYKRB`rW)^9vR&|% zb!mA2B`NTm`>iMC%KxBXVElTFR=aZ>f>0m>zi;(C?KXsf3t# zMV2s#1aiW;L~y{%e(+PgSkVLk03&bE?5D9k>-?N8Q-gCch>o1>77M6?000vVYS7>K z=DlJ{=-l$E#}w7~ud2)zls*T-tE>egeKS@SyfDUjW;vUV#H>-|pacVcl%kT9uieXU zn2?qnJ~kpJ3sHs1?rFN&nA`Y7hjbUd)O)#$nQdoEpT;BrVCCOkvEH9H(~J7B0gc4U ztWzMGzI*q**XiQSvpPrs=5XYI3v1k|AOixfVz(ISYKq4*Y4WA&KT9h|*fj0`4oinx z^i~E}oz!uXk$sFpKn6ZS&L=(4wD7$*H9b#brx8t_vW&Zu05!Wz-on}QZT#WrYj4yL z2IMaHF)#;FWNg%)Q{IPCt(Em`2gQV=q6Hls00Rp7tOS90U8-p*;}t#pAkj}%)iW1|P*X=)MY|!H3JJQBJ4t)3 zQuybp729sMxa)8~1W3@`Y2qz*SrK1mYpt|d|C(3n@HzWdS8=Rkm?l2pHJfP#PlOTu ztq=ePp*_p8_1$-hF?{T`H+cE)O3Y05t?f%>yUff#NWxOVsOmk(Z*L&9%5soGbRNFF zg+6T;mhTLFBq4Y`YFx*4)tt7IuBoicfz@;TlG)wYnsnD~QnF16 zRC2F6mWbg}!(}h$PCZ0eVe6>No7^>*h&hEHX;s>tpS})Z*^ZOY`tR+MufU<`o`cVm z5C(_=ioMBS+Znyl!NN3)xlKUUN&Vvu*neRUIOS zmQF{-0V$_E7io;zaY7I&)%Mpc-PYBB1lt+bcIkQrDHCF0rN83GRZ?n3wkem8qv^rf zAkjJCohGdr;E2TaxJ@hQ94C|JB^H-sF^<)zSMk}<#X;Rzrq9%_ zscaT}T8c$_SvvC;lTK8ijmwK=G%u=p!X6=>jkE1f*V>xBN|w-Is1UqYBB{Zmz9f`& z$+f{b1nyMCtrkrKqnTHxsm+X6dBX%}XCOvk1}L)~X0e#CVwAkII(;%$zsch%rA1fz zf02RoCS_d4bA<}C6ev2}1{VZ>G7s(wq*)~8T_AjnZsTlDQX4Kv=8kQ3TOVed%VI>L z`N47nVbi%Tlh5FxxQ-&a7-)GWc@lN^ObOK2C2rN?#&gT9bOpa1Kx}L%W}C7>ifsu0 z!80o0ARLNrxv5&bwR0NOqhdPutWgfVu>x|GK(>gJZ*3+j+)D$$qv6*NL_LBvXNP;6zBBd&k ze_)n_tVHhiRrNE}!Ary;z$WVSE(?Hyf5N!db;$+D^d~5(8JMe8x;*4oJ-)r5YPm%i zd8x&!X1Q_ED!52InubLIAOkcf2o6KMf?vNw>NKMfEA^#P@e)gOQ`%5Onqzh{0m958CeO*iEP_Zwm$I~{RSiWIrHy-i7 YZ&T%1Gq`O=N#Fck$rRy2K%zNv5SQOTn*aa+ diff --git a/data/dist_data.rda b/data/dist_data.rda index 486e00ac9515858c8ec8f94c38fc4d91026fb5af..90572a41721ed14812d7a166bde019952c95cf2b 100644 GIT binary patch literal 280 zcmV+z0q6cgT4*^jL0KkKS-KqtMF0TJ|G@wHNB{r>2tWlO7C^tJ-;h860RgZ8`k*vK z)jg7VCe=Sl>S&A;Wjzd=O;BJoWHcB+Gy_cl0Fg-4^%`UV00004XqcIV8dHQ=M5Z-4 zDs4{*6Tt&%M6JGwMDmm%H0P~E2)Y?IcV9se08n6ISGRpR2RFw&qV>{pje3H^5K@FO zA`dfz8$mEMn?eS}7z9HDCl~=en?CgRzX}At@%)ZFBf2Rw4A6VdL3#$Uf>}vYu=)9C z8eEX~OJ(HiG3M(@fl6?|G@wHNB{r<7ytwy5J11D-;h860RgZ8_?R?Q z)6~=TL-j_&hC@TtXdcvo6G+kO27ojG27m%Z2|TI#o|JkM1Ob6C(pCa(D1?|~C1-rq zyyHmFXfA1FC-+)haf~2Yx^2NHe;ZziAf#=W^jxoikUREneR^f9Fyi!SfDNz(*S}55C;f!oQjyn VB&hPQ<$!?xF64@Ep&+DY7+Ay)chCR; diff --git a/vignettes/additional-technical-details.Rmd b/vignettes/additional-technical-details.Rmd index d4ec464d..0379dc97 100644 --- a/vignettes/additional-technical-details.Rmd +++ b/vignettes/additional-technical-details.Rmd @@ -43,7 +43,7 @@ knitr::opts_chunk$set( The ssdtools package uses the method of Maximum Likelihood (ML) to estimate parameters for each distribution that is fit to the data. Statistical theory says that maximum likelihood estimators are asymptotically unbiased, but does not guarantee performance in small samples. -A detailed account of the issue of small sample bias in estimates can be found in the following [pdf](https://github.com/bcgov/ssdtools/blob/master/vignettes/small-sample-bias.pdf). +A detailed account of the issue of small sample bias in estimates can be found in the small sample size vignette. ## Investigations into setting minimum sample sizes for uni-modal and bi-modal distributions in ssdtools