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Allow flavor selection in bc.st.highly_variable_genes() #320

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llumdi opened this issue Aug 22, 2023 · 0 comments
Open

Allow flavor selection in bc.st.highly_variable_genes() #320

llumdi opened this issue Aug 22, 2023 · 0 comments
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enhancement New feature or request std workflow Changes to the standard workflow.

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@llumdi
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llumdi commented Aug 22, 2023

Hi,
After Samuel Rutz's talk today at the single cell meeting, I think it would be good to incorporate the flavor param from scanpy's function (instead of only allowing the default 'seurat'). https://scanpy.readthedocs.io/en/stable/generated/scanpy.pp.highly_variable_genes.html

I would also suggest setting the default flavor to seurat_v3
Thanks,
Llucia
@llumdi llumdi added enhancement New feature or request std workflow Changes to the standard workflow. labels Aug 22, 2023
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enhancement New feature or request std workflow Changes to the standard workflow.
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