Sample names in fecal.Rmd

[IsabelFE]

Hi! I am trying to run the code below line 138. In theory reading the st2 and tax2 RDS should be enough, but in line 154 sample.names2 is needed and it is not in the environment. Since the initial raw files are not available yet I am stuck in this spot. Thanks

[benjjneb]

Thanks for letting me know. You can extract the sample names from the sequence table as so:

sample.names2 <- rownames(st2)

[IsabelFE]

Thanks, that makes sense, I should have thought about that :)