cpo_workflow.ga

{"uuid": "42294bfe-f69a-41cb-950f-576cedc2da4e", "tags": [], "format-version": "0.1", "name": "CPO", "steps": {"0": {"tool_id": null, "tool_version": null, "outputs": [], "workflow_outputs": [{"output_name": "output", "uuid": "5bca1402-92fc-4cf5-a665-5065bfc65905", "label": null}], "input_connections": {}, "tool_state": "{\"collection_type\": \"list\"}", "id": 0, "uuid": "aee0ebf1-063f-4a4e-9b20-6fcbd3fcba1e", "errors": null, "name": "Input dataset collection", "label": "contigs", "inputs": [], "position": {"top": 200, "left": 200}, "annotation": "", "content_id": null, "type": "data_collection_input"}, "1": {"tool_id": null, "tool_version": null, "outputs": [], "workflow_outputs": [{"output_name": "output", "uuid": "3e7814b3-5f96-4a7e-9e03-9c38deb789fe", "label": null}], "input_connections": {}, "tool_state": "{}", "id": 1, "uuid": "13ab86bf-d6f2-4039-84a0-247f9c16f928", "errors": null, "name": "Input dataset", "label": "Reference", "inputs": [], "position": {"top": 287, "left": 200}, "annotation": "", "content_id": null, "type": "data_input"}, "2": {"tool_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_plasmidfinder/0.8", "tool_version": "0.8", "outputs": [{"type": "tabular", "name": "report"}], "workflow_outputs": [], "input_connections": {"input": {"output_name": "output", "id": 0}}, "tool_state": "{\"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}", "id": 2, "tool_shed_repository": {"owner": "jjjjia", "changeset_revision": "a14b12a71a53", "name": "cpo_prediction", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "947ee72d-908e-428a-98c6-af9adad2b8ba", "errors": null, "name": "cpo_plasmidfinder", "post_job_actions": {"HideDatasetActionreport": {"output_name": "report", "action_type": "HideDatasetAction", "action_arguments": {}}}, "label": null, "inputs": [{"name": "input", "description": "runtime parameter for tool cpo_plasmidfinder"}], "position": {"top": 200, "left": 498}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_plasmidfinder/0.8", "type": "tool"}, "3": {"tool_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_rgi/4.0.3", "tool_version": "4.0.3", "outputs": [{"type": "tabular", "name": "rgiResultTsv"}], "workflow_outputs": [], "input_connections": {"input": {"output_name": "output", "id": 0}}, "tool_state": "{\"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}", "id": 3, "tool_shed_repository": {"owner": "jjjjia", "changeset_revision": "a14b12a71a53", "name": "cpo_prediction", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "b5223065-0e68-4d24-a8f7-587cfe659ce4", "errors": null, "name": "cpo_rgi", "post_job_actions": {"HideDatasetActionrgiResultTsv": {"output_name": "rgiResultTsv", "action_type": "HideDatasetAction", "action_arguments": {}}}, "label": null, "inputs": [{"name": "input", "description": "runtime parameter for tool cpo_rgi"}], "position": {"top": 323, "left": 498}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_rgi/4.0.3", "type": "tool"}, "4": {"tool_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_resfinder/0.8", "tool_version": "0.8", "outputs": [{"type": "tabular", "name": "report"}], "workflow_outputs": [], "input_connections": {"input": {"output_name": "output", "id": 0}}, "tool_state": "{\"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}", "id": 4, "tool_shed_repository": {"owner": "jjjjia", "changeset_revision": "a14b12a71a53", "name": "cpo_prediction", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "d5dfc88e-c54a-4607-8ed5-99f319f0231d", "errors": null, "name": "cpo_resfinder", "post_job_actions": {"HideDatasetActionreport": {"output_name": "report", "action_type": "HideDatasetAction", "action_arguments": {}}}, "label": null, "inputs": [{"name": "input", "description": "runtime parameter for tool cpo_resfinder"}], "position": {"top": 446, "left": 498}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_resfinder/0.8", "type": "tool"}, "5": {"tool_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_mob_recon/1.4.8", "tool_version": "1.4.8", "outputs": [{"type": "tabular", "name": "outfile1"}, {"type": "tabular", "name": "outfile2"}, {"type": "fasta", "name": "outfile3"}, {"type": "tabular", "name": "outfile4"}, {"type": "fasta", "name": "outfile5"}], "workflow_outputs": [], "input_connections": {"input": {"output_name": "output", "id": 0}}, "tool_state": "{\"adv_param\": \"{\\\"run_circlator\\\": \\\"True\\\", \\\"min_length_condition\\\": {\\\"min_length_param\\\": \\\"False\\\", \\\"__current_case__\\\": 1}, \\\"unicycler_contigs\\\": \\\"True\\\"}\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}", "id": 5, "tool_shed_repository": {"owner": "jjjjia", "changeset_revision": "a14b12a71a53", "name": "cpo_prediction", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "5c68b0aa-7fb6-42bd-8bd1-922b4350dddb", "errors": null, "name": "cpo_mob_recon", "post_job_actions": {"HideDatasetActionoutfile1": {"output_name": "outfile1", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionoutfile3": {"output_name": "outfile3", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionoutfile2": {"output_name": "outfile2", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionoutfile5": {"output_name": "outfile5", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionoutfile4": {"output_name": "outfile4", "action_type": "HideDatasetAction", "action_arguments": {}}}, "label": null, "inputs": [{"name": "input", "description": "runtime parameter for tool cpo_mob_recon"}], "position": {"top": 1003, "left": 498}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_mob_recon/1.4.8", "type": "tool"}, "6": {"tool_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_mlst/2.11", "tool_version": "2.11", "outputs": [{"type": "tabular", "name": "report"}], "workflow_outputs": [], "input_connections": {"input_file": {"output_name": "output", "id": 0}}, "tool_state": "{\"__page__\": null, \"__rerun_remap_job_id__\": null, \"settings\": \"{\\\"__current_case__\\\": 0, \\\"advanced\\\": \\\"simple\\\"}\", \"input_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", "id": 6, "tool_shed_repository": {"owner": "jjjjia", "changeset_revision": "a14b12a71a53", "name": "cpo_prediction", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "6f31c85e-85e2-4bf2-8306-7830cf6da23b", "errors": null, "name": "cpo_mlst", "post_job_actions": {"HideDatasetActionreport": {"output_name": "report", "action_type": "HideDatasetAction", "action_arguments": {}}}, "label": null, "inputs": [{"name": "input_file", "description": "runtime parameter for tool cpo_mlst"}], "position": {"top": 1252, "left": 498}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_mlst/2.11", "type": "tool"}, "7": {"tool_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_snippy/3.2", "tool_version": "3.2", "outputs": [{"type": "vcf", "name": "snpvcf"}, {"type": "gff3", "name": "snpgff"}, {"type": "tabular", "name": "snptab"}, {"type": "tabular", "name": "snpsum"}, {"type": "txt", "name": "snplog"}, {"type": "fasta", "name": "snpalign"}, {"type": "fasta", "name": "snpconsensus"}, {"type": "tabular", "name": "snpsdepth"}, {"type": "bam", "name": "snpsbam"}, {"type": "zip", "name": "outdir"}], "workflow_outputs": [], "input_connections": {"input": {"output_name": "output", "id": 0}, "ref": {"output_name": "output", "id": 1}}, "tool_state": "{\"__page__\": null, \"__rerun_remap_job_id__\": null, \"cleanup\": \"\\\"false\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"ref\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"advanced\": \"{\\\"is_advanced\\\": \\\"simple\\\", \\\"__current_case__\\\": 1}\"}", "id": 7, "tool_shed_repository": {"owner": "jjjjia", "changeset_revision": "a14b12a71a53", "name": "cpo_prediction", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "6654085a-8c5c-4089-a1b1-af8b925b350b", "errors": null, "name": "CPO_Snippy", "post_job_actions": {"HideDatasetActionsnpgff": {"output_name": "snpgff", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionsnpsdepth": {"output_name": "snpsdepth", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionsnpsbam": {"output_name": "snpsbam", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionoutdir": {"output_name": "outdir", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionsnpvcf": {"output_name": "snpvcf", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionsnptab": {"output_name": "snptab", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionsnpalign": {"output_name": "snpalign", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionsnpconsensus": {"output_name": "snpconsensus", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionsnpsum": {"output_name": "snpsum", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionsnplog": {"output_name": "snplog", "action_type": "HideDatasetAction", "action_arguments": {}}}, "label": null, "inputs": [{"name": "input", "description": "runtime parameter for tool CPO_Snippy"}, {"name": "ref", "description": "runtime parameter for tool CPO_Snippy"}], "position": {"top": 569, "left": 498}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_snippy/3.2", "type": "tool"}, "8": {"tool_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_prediction_parser/0.1.0", "tool_version": "0.1.0", "outputs": [{"type": "tabular", "name": "tsvSummary"}, {"type": "tabular", "name": "tsvSummaryExistingFormat"}, {"type": "txt", "name": "txtSummary"}], "workflow_outputs": [], "input_connections": {"mobsuiteaggregate": {"output_name": "outfile4", "id": 5}, "mobsuitecontig": {"output_name": "outfile1", "id": 5}, "mlst": {"output_name": "report", "id": 6}, "plasmidfinder": {"output_name": "report", "id": 2}, "rgi": {"output_name": "rgiResultTsv", "id": 3}, "contig": {"output_name": "output", "id": 0}, "abricate": {"output_name": "report", "id": 4}}, "tool_state": "{\"__page__\": null, \"mobsuiteaggregate\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"mobsuitecontig\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"mlst\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"plasmidfinder\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"expected\": \"\\\"\\\"\", \"rgi\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"contig\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"abricate\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", "id": 8, "tool_shed_repository": {"owner": "jjjjia", "changeset_revision": "a14b12a71a53", "name": "cpo_prediction", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "58bd1799-ba81-4f40-9466-a8c2715c1f19", "errors": null, "name": "cpo_prediction_parser", "post_job_actions": {"HideDatasetActiontsvSummaryExistingFormat": {"output_name": "tsvSummaryExistingFormat", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActiontsvSummary": {"output_name": "tsvSummary", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActiontxtSummary": {"output_name": "txtSummary", "action_type": "HideDatasetAction", "action_arguments": {}}}, "label": null, "inputs": [{"name": "mobsuiteaggregate", "description": "runtime parameter for tool cpo_prediction_parser"}, {"name": "mobsuitecontig", "description": "runtime parameter for tool cpo_prediction_parser"}, {"name": "mlst", "description": "runtime parameter for tool cpo_prediction_parser"}, {"name": "plasmidfinder", "description": "runtime parameter for tool cpo_prediction_parser"}, {"name": "rgi", "description": "runtime parameter for tool cpo_prediction_parser"}, {"name": "contig", "description": "runtime parameter for tool cpo_prediction_parser"}, {"name": "abricate", "description": "runtime parameter for tool cpo_prediction_parser"}], "position": {"top": 400, "left": 760}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_prediction_parser/0.1.0", "type": "tool"}, "9": {"tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/3.2", "tool_version": "3.2", "outputs": [{"type": "fasta", "name": "alignment_fasta"}, {"type": "fasta", "name": "full_alignment_fasta"}, {"type": "tabular", "name": "alignment_table"}, {"type": "txt", "name": "alignment_summary"}], "workflow_outputs": [], "input_connections": {"indirs": {"output_name": "outdir", "id": 7}}, "tool_state": "{\"outputs\": \"[\\\"outaln\\\"]\", \"is_reference\": \"\\\"false\\\"\", \"indirs\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}", "id": 9, "tool_shed_repository": {"owner": "iuc", "changeset_revision": "c9a8ef2aa380", "name": "snippy", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "77dc4196-3fef-41ac-b385-5eff2ebb1764", "errors": null, "name": "snippy-core", "post_job_actions": {"HideDatasetActionfull_alignment_fasta": {"output_name": "full_alignment_fasta", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionalignment_summary": {"output_name": "alignment_summary", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionalignment_table": {"output_name": "alignment_table", "action_type": "HideDatasetAction", "action_arguments": {}}, "HideDatasetActionalignment_fasta": {"output_name": "alignment_fasta", "action_type": "HideDatasetAction", "action_arguments": {}}}, "label": null, "inputs": [{"name": "indirs", "description": "runtime parameter for tool snippy-core"}], "position": {"top": 200, "left": 760}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/3.2", "type": "tool"}, "10": {"tool_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_prediction_combiner/0.1.0", "tool_version": "0.1.0", "outputs": [{"type": "tabular", "name": "combinedSummary"}], "workflow_outputs": [{"output_name": "combinedSummary", "uuid": "84dc0591-8762-4ea0-ac1e-7bac950e989a", "label": null}], "input_connections": {"indirs": {"output_name": "tsvSummary", "id": 8}}, "tool_state": "{\"__page__\": null, \"__rerun_remap_job_id__\": null, \"indirs\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", "id": 10, "tool_shed_repository": {"owner": "jjjjia", "changeset_revision": "a14b12a71a53", "name": "cpo_prediction", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "12b76456-15da-4daf-81a8-d8fa35df32f6", "errors": null, "name": "cpo_prediction_combiner", "post_job_actions": {}, "label": "NewFormat", "inputs": [{"name": "indirs", "description": "runtime parameter for tool cpo_prediction_combiner"}], "position": {"top": 432, "left": 1088}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_prediction_combiner/0.1.0", "type": "tool"}, "11": {"tool_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_prediction_combiner/0.1.0", "tool_version": "0.1.0", "outputs": [{"type": "tabular", "name": "combinedSummary"}], "workflow_outputs": [{"output_name": "combinedSummary", "uuid": "79d4784d-c6b6-4797-8c45-1579995e5d7c", "label": null}], "input_connections": {"indirs": {"output_name": "tsvSummaryExistingFormat", "id": 8}}, "tool_state": "{\"__page__\": null, \"__rerun_remap_job_id__\": null, \"indirs\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", "id": 11, "tool_shed_repository": {"owner": "jjjjia", "changeset_revision": "a14b12a71a53", "name": "cpo_prediction", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "e5668b8c-e469-47e3-8053-f9b2094fea50", "errors": null, "name": "cpo_prediction_combiner", "post_job_actions": {}, "label": "OldFormat(Linda)", "inputs": [{"name": "indirs", "description": "runtime parameter for tool cpo_prediction_combiner"}], "position": {"top": 547, "left": 1089}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_prediction_combiner/0.1.0", "type": "tool"}, "12": {"tool_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_clustalw/2.1", "tool_version": "2.1", "outputs": [{"type": "txt", "name": "phylip"}], "workflow_outputs": [{"output_name": "phylip", "uuid": "baa95d55-8166-47bc-bb22-1796bb6da973", "label": null}], "input_connections": {"input": {"output_name": "alignment_fasta", "id": 9}}, "tool_state": "{\"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}", "id": 12, "tool_shed_repository": {"owner": "jjjjia", "changeset_revision": "a14b12a71a53", "name": "cpo_prediction", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "1d7192dc-13b6-4527-ab88-2a3c2bed8f6f", "errors": null, "name": "cpo_clustalw", "post_job_actions": {}, "label": null, "inputs": [{"name": "input", "description": "runtime parameter for tool cpo_clustalw"}], "position": {"top": 200, "left": 1088}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_clustalw/2.1", "type": "tool"}, "13": {"tool_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_snippy_dist/0.6", "tool_version": "0.6", "outputs": [{"type": "tabular", "name": "distance.tab"}], "workflow_outputs": [{"output_name": "distance.tab", "uuid": "809bfd94-f0dc-45be-8e4f-578f43af2dd3", "label": null}], "input_connections": {"input": {"output_name": "alignment_fasta", "id": 9}}, "tool_state": "{\"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}", "id": 13, "tool_shed_repository": {"owner": "jjjjia", "changeset_revision": "a14b12a71a53", "name": "cpo_prediction", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "d3d32dd0-d0e9-4094-89f0-ae37d8fd6e12", "errors": null, "name": "cpo_snippy_dist", "post_job_actions": {}, "label": null, "inputs": [{"name": "input", "description": "runtime parameter for tool cpo_snippy_dist"}], "position": {"top": 316, "left": 1088}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_snippy_dist/0.6", "type": "tool"}, "14": {"tool_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_tree_drawer/0.1.0", "tool_version": "0.1.0", "outputs": [{"type": "pdf", "name": "tsvSummary"}], "workflow_outputs": [{"output_name": "tsvSummary", "uuid": "2135f2e9-8da9-4966-ac19-cc6fc312e692", "label": null}], "input_connections": {"distance": {"output_name": "distance.tab", "id": 13}, "tree": {"output_name": "phylip", "id": 12}, "metadata": {"output_name": "combinedSummary", "id": 10}}, "tool_state": "{\"__page__\": null, \"distance\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"tree\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"metadata\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", "id": 14, "tool_shed_repository": {"owner": "jjjjia", "changeset_revision": "a14b12a71a53", "name": "cpo_prediction", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "b0c9ec76-1b50-4ebb-9bfa-511af38d7afc", "errors": null, "name": "cpo_tree_drawer", "post_job_actions": {"DeleteIntermediatesActiontsvSummary": {"output_name": "tsvSummary", "action_type": "DeleteIntermediatesAction", "action_arguments": {}}}, "label": null, "inputs": [{"name": "distance", "description": "runtime parameter for tool cpo_tree_drawer"}, {"name": "tree", "description": "runtime parameter for tool cpo_tree_drawer"}, {"name": "metadata", "description": "runtime parameter for tool cpo_tree_drawer"}], "position": {"top": 200, "left": 1393}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction/cpo_tree_drawer/0.1.0", "type": "tool"}}, "annotation": "", "a_galaxy_workflow": "true"}