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MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.

MetaPhlAn documentation

MetaPhlAn 4

You can find here the documentation for the latest version (version 4) of MetaPhlAn.

MetaPhlAn 3.1

You can find here the documentation for the 3.1 version of MetaPhlAn.

MetaPhlAn 3.0

You can find here the documentation for the 3.0 version of MetaPhlAn.

MetaPhlAn2

A documentation for the previous version MetaPhlAn2 is available here

StrainPhlAn documentation

StrainPhlAn 4

You can find here the documentation for the latest version (version 4) of StrainPhlAn.

StrainPhlAn 3

You can find here the documentation for the 3 version of StrainPhlAn.

StrainPhlAn

A documentation for the first version StrainPhlAn is available here

Strain Sharing Inference

You can find here the documentation for performing strain sharing analyses using StrainPhlAn.