diff --git a/INSTALL.md b/INSTALL.md index 778544e0..017522a0 100644 --- a/INSTALL.md +++ b/INSTALL.md @@ -32,7 +32,8 @@ For Mac/Linux users, you can skip the following manual installation steps and di ```python conda create -n calour python=3.5 source activate calour -conda install -c bioconda calour +conda install -c bioconda calour # if you want to just install calour +conda install -c bioconda calour-full # if you want to install calour and its optional dependencies ``` ### Install the latest manually from github repository @@ -105,11 +106,11 @@ pip install git+git://github.com/biocore/calour.git * Install the [phenotype-database](https://doi.org/10.6084/m9.figshare.4272392) calour interface: -\(based on : [Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information](http://msphere.asm.org/content/2/4/e00237-17) - Barberán et al. 2017\) + (based on : [Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information](http://msphere.asm.org/content/2/4/e00237-17) - Barberán et al. 2017\) -``` -pip install git+git://github.com/amnona/pheno-calour -``` + ``` + pip install git+git://github.com/amnona/pheno-calour + ``` * For metabolomics, also install the [GNPS](http://gnps.ucsd.edu/) calour interface: ```