diff --git a/ldsc.py b/ldsc.py index aa81340a..d9930d08 100755 --- a/ldsc.py +++ b/ldsc.py @@ -422,7 +422,7 @@ def ldscore(args, log): parser = argparse.ArgumentParser() parser.add_argument('--out', default='ldsc', type=str, help='Output filename prefix. If --out is not set, LDSC will use ldsc as the ' - 'defualt output filename prefix.') + 'default output filename prefix.') # Basic LD Score Estimation Flags' parser.add_argument('--bfile', default=None, type=str, help='Prefix for Plink .bed/.bim/.fam file') @@ -482,7 +482,7 @@ def ldscore(args, log): 'i.e., \ell_j := \sum_k (p_k(1-p_k))^a r^2_{jk}, where p_k denotes the MAF ' 'of SNP j and a is the argument to --pq-exp. ') parser.add_argument('--no-print-annot', default=False, action='store_true', - help='By defualt, seting --cts-bin or --cts-bin-add causes LDSC to print ' + help='By default, setting --cts-bin or --cts-bin-add causes LDSC to print ' 'the resulting annot matrix. Setting --no-print-annot tells LDSC not ' 'to print the annot matrix. ') parser.add_argument('--maf', default=None, type=float, diff --git a/munge_sumstats.py b/munge_sumstats.py index b84e98c9..00265a8e 100755 --- a/munge_sumstats.py +++ b/munge_sumstats.py @@ -137,7 +137,7 @@ def get_cname_map(flag, default, ignore): (2) use everything in flags that is not in ignore (3) use everything in default that is not in ignore or in flags - The keys of flag are cleaned. The entries of ignore are not cleaned. The keys of defualt + The keys of flag are cleaned. The entries of ignore are not cleaned. The keys of default are cleaned. But all equality is modulo clean_header(). '''